» Articles » PMID: 28127680

Mass Spectral Library Quality Assurance by Inter-Library Comparison

Overview
Specialty Chemistry
Date 2017 Jan 28
PMID 28127680
Citations 23
Authors
Affiliations
Soon will be listed here.
Abstract

A method to discover and correct errors in mass spectral libraries is described. Comparing across a set of highly curated reference libraries compounds that have the same chemical structure quickly identifies entries that are outliers. In cases where three or more entries for the same compound are compared, the outlier as determined by visual inspection was almost always found to contain the error. These errors were either in the spectrum itself or in the chemical descriptors that accompanied it. The method is demonstrated on finding errors in compounds of forensic interest in the NIST/EPA/NIH Mass Spectral Library. The target list of compounds checked was the Scientific Working Group for the Analysis of Seized Drugs (SWGDRUG) mass spectral library. Some examples of errors found are described. A checklist of errors that curators should look for when performing inter-library comparisons is provided. Graphical Abstract ᅟ.

Citing Articles

Decoding the aroma of Rosa canina L.: Chemical composition and gene expression.

Jariani P, Shahnejat-Bushehri A, Naderi R, Zargar M, Naghavi M PLoS One. 2025; 20(1):e0316324.

PMID: 39854304 PMC: 11760583. DOI: 10.1371/journal.pone.0316324.


Same, but different: Variations in fragment ions among stereoisomers of a 17α-methyl steroid in gas chromatography/electron ionization mass spectrometry.

Steff J, Parr M Rapid Commun Mass Spectrom. 2024; 39(2):e9934.

PMID: 39600139 PMC: 11599789. DOI: 10.1002/rcm.9934.


LibGen: Generating High Quality Spectral Libraries of Natural Products for EAD-, UVPD-, and HCD-High Resolution Mass Spectrometers.

Kong F, Keshet U, Shen T, Rodriguez E, Fiehn O Anal Chem. 2023; 95(46):16810-16818.

PMID: 37939222 PMC: 11492814. DOI: 10.1021/acs.analchem.3c02263.


On the challenge of unambiguous identification of fentanyl analogs: Exploring measurement diversity using standard reference mass spectral libraries.

Moorthy A, Erisman E, Kearsley A, Liang Y, Sisco E, Wallace W J Forensic Sci. 2023; 68(5):1494-1503.

PMID: 37431311 PMC: 10517722. DOI: 10.1111/1556-4029.15322.


Expert Algorithm for Substance Identification Using Mass Spectrometry: Statistical Foundations in Unimolecular Reaction Rate Theory.

Jackson G, Mehnert S, Davidson J, Lowe B, Ruiz E, King J J Am Soc Mass Spectrom. 2023; 34(7):1248-1262.

PMID: 37255332 PMC: 10326912. DOI: 10.1021/jasms.3c00089.


References
1.
Ausloos P, Clifton C, Lias S, Mikaya A, Stein S, Tchekhovskoi D . The critical evaluation of a comprehensive mass spectral library. J Am Soc Mass Spectrom. 1999; 10(4):287-99. DOI: 10.1016/S1044-0305(98)00159-7. View

2.
Stein S . Estimating probabilities of correct identification from results of mass spectral library searches. J Am Soc Mass Spectrom. 2013; 5(4):316-23. DOI: 10.1016/1044-0305(94)85022-4. View

3.
Lias S . Numeric Databases for Chemical Analysis. J Res Natl Inst Stand Technol. 2017; 94(1):25-35. PMC: 4954592. DOI: 10.6028/jres.094.005. View

4.
Stein S, Scott D . Optimization and testing of mass spectral library search algorithms for compound identification. J Am Soc Mass Spectrom. 2013; 5(9):859-66. DOI: 10.1016/1044-0305(94)87009-8. View

5.
Oberacher H, Whitley G, Berger B . Evaluation of the sensitivity of the 'Wiley registry of tandem mass spectral data, MSforID' with MS/MS data of the 'NIST/NIH/EPA mass spectral library'. J Mass Spectrom. 2013; 48(4):487-96. DOI: 10.1002/jms.3184. View