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Bright Photoactivatable Fluorophores for Single-molecule Imaging

Overview
Journal Nat Methods
Date 2016 Nov 8
PMID 27776112
Citations 165
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Abstract

Small-molecule fluorophores are important tools for advanced imaging experiments. We previously reported a general method to improve small, cell-permeable fluorophores which resulted in the azetidine-containing 'Janelia Fluor' (JF) dyes. Here, we refine and extend the utility of these dyes by synthesizing photoactivatable derivatives that are compatible with live-cell labeling strategies. Once activated, these derived compounds retain the superior brightness and photostability of the JF dyes, enabling improved single-particle tracking and facile localization microscopy experiments.

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References
1.
Manley S, Gillette J, Patterson G, Shroff H, Hess H, Betzig E . High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nat Methods. 2008; 5(2):155-7. DOI: 10.1038/nmeth.1176. View

2.
Wang S, Moffitt J, Dempsey G, Xie X, Zhuang X . Characterization and development of photoactivatable fluorescent proteins for single-molecule-based superresolution imaging. Proc Natl Acad Sci U S A. 2014; 111(23):8452-7. PMC: 4060684. DOI: 10.1073/pnas.1406593111. View

3.
Katz Z, English B, Lionnet T, Yoon Y, Monnier N, Ovryn B . Mapping translation 'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes. Elife. 2016; 5. PMC: 4764586. DOI: 10.7554/eLife.10415. View

4.
Habuchi S, Tsutsui H, Kochaniak A, Miyawaki A, van Oijen A . mKikGR, a monomeric photoswitchable fluorescent protein. PLoS One. 2008; 3(12):e3944. PMC: 2592542. DOI: 10.1371/journal.pone.0003944. View

5.
Grimm J, Sung A, Legant W, Hulamm P, Matlosz S, Betzig E . Carbofluoresceins and carborhodamines as scaffolds for high-contrast fluorogenic probes. ACS Chem Biol. 2013; 8(6):1303-10. PMC: 3691720. DOI: 10.1021/cb4000822. View