» Articles » PMID: 27264992

Isoxazole-Derived Amino Acids Are Bromodomain-Binding Acetyl-Lysine Mimics: Incorporation into Histone H4 Peptides and Histone H3

Overview
Specialty Chemistry
Date 2016 Jun 7
PMID 27264992
Citations 7
Authors
Affiliations
Soon will be listed here.
Abstract

A range of isoxazole-containing amino acids was synthesized that displaced acetyl-lysine-containing peptides from the BAZ2A, BRD4(1), and BRD9 bromodomains. Three of these amino acids were incorporated into a histone H4-mimicking peptide and their affinity for BRD4(1) was assessed. Affinities of the isoxazole-containing peptides are comparable to those of a hyperacetylated histone H4-mimicking cognate peptide, and demonstrated a dependence on the position at which the unnatural residue was incorporated. An isoxazole-based alkylating agent was developed to selectively alkylate cysteine residues in situ. Selective monoalkylation of a histone H4-mimicking peptide, containing a lysine to cysteine residue substitution (K12C), resulted in acetyl-lysine mimic incorporation, with high affinity for the BRD4 bromodomain. The same technology was used to alkylate a K18C mutant of histone H3.

Citing Articles

Small Molecule Ligands of the BET-like Bromodomain, BRD3, Affect Survival, Oviposition, and Development.

Schiedel M, McArdle D, Padalino G, Chan A, Forde-Thomas J, McDonough M J Med Chem. 2023; 66(23):15801-15822.

PMID: 38048437 PMC: 10726355. DOI: 10.1021/acs.jmedchem.3c01321.


Bromodomain Factor 5 as a Target for Antileishmanial Drug Discovery.

Russell C, Carter J, Borgia J, Bush J, Calderon F, Gabarro R ACS Infect Dis. 2023; 9(11):2340-2357.

PMID: 37906637 PMC: 10644352. DOI: 10.1021/acsinfecdis.3c00431.


Mutate and Conjugate: A Method to Enable Rapid In-Cell Target Validation.

Thomas A, Serafini M, Grant E, Coombs E, Bluck J, Schiedel M ACS Chem Biol. 2023; 18(11):2405-2417.

PMID: 37874862 PMC: 10660337. DOI: 10.1021/acschembio.3c00437.


Identification of Histone Peptide Binding Specificity and Small-Molecule Ligands for the TRIM33α and TRIM33β Bromodomains.

Sekirnik A, Reynolds J, See L, Bluck J, Scorah A, Tallant C ACS Chem Biol. 2022; 17(10):2753-2768.

PMID: 36098557 PMC: 9594046. DOI: 10.1021/acschembio.2c00266.


Regioselective synthesis of methyl 5-(-Boc-cycloaminyl)-1,2-oxazole-4-carboxylates as new amino acid-like building blocks.

Bruzguliene J, Rackauskiene G, Bieliauskas A, Milisiunaite V, Dagiliene M, Matuleviciute G Beilstein J Org Chem. 2022; 18:102-109.

PMID: 35096179 PMC: 8767561. DOI: 10.3762/bjoc.18.11.


References
1.
Fatkins D, Monnot A, Zheng W . Nepsilon-thioacetyl-lysine: a multi-facet functional probe for enzymatic protein lysine Nepsilon-deacetylation. Bioorg Med Chem Lett. 2006; 16(14):3651-6. DOI: 10.1016/j.bmcl.2006.04.075. View

2.
Smith B, Denu J . Acetyl-lysine analog peptides as mechanistic probes of protein deacetylases. J Biol Chem. 2007; 282(51):37256-65. DOI: 10.1074/jbc.M707878200. View

3.
De Luca L, Giacomelli G, Riu A . Solid-phase synthesis of isoxazole-based amino acids: a new scaffold for molecular diversity. J Org Chem. 2001; 66(20):6823-5. DOI: 10.1021/jo015758v. View

4.
Smith B, Denu J . Sir2 deacetylases exhibit nucleophilic participation of acetyl-lysine in NAD+ cleavage. J Am Chem Soc. 2007; 129(18):5802-3. PMC: 2568996. DOI: 10.1021/ja070162w. View

5.
Muir T, Sondhi D, Cole P . Expressed protein ligation: a general method for protein engineering. Proc Natl Acad Sci U S A. 1998; 95(12):6705-10. PMC: 22605. DOI: 10.1073/pnas.95.12.6705. View