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Reduced Histone Expression or a Defect in Chromatin Assembly Induces Respiration

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Journal Mol Cell Biol
Specialty Cell Biology
Date 2016 Jan 21
PMID 26787838
Citations 19
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Abstract

Regulation of mitochondrial biogenesis and respiration is a complex process that involves several signaling pathways and transcription factors as well as communication between the nuclear and mitochondrial genomes. Here we show that decreased expression of histones or a defect in nucleosome assembly in the yeast Saccharomyces cerevisiae results in increased mitochondrial DNA (mtDNA) copy numbers, oxygen consumption, ATP synthesis, and expression of genes encoding enzymes of the tricarboxylic acid (TCA) cycle and oxidative phosphorylation (OXPHOS). The metabolic shift from fermentation to respiration induced by altered chromatin structure is associated with the induction of the retrograde (RTG) pathway and requires the activity of the Hap2/3/4/5p complex as well as the transport and metabolism of pyruvate in mitochondria. Together, our data indicate that altered chromatin structure relieves glucose repression of mitochondrial respiration by inducing transcription of the TCA cycle and OXPHOS genes carried by both nuclear and mitochondrial DNA.

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References
1.
Adkins M, Tyler J . The histone chaperone Asf1p mediates global chromatin disassembly in vivo. J Biol Chem. 2004; 279(50):52069-74. DOI: 10.1074/jbc.M406113200. View

2.
Diaz-Ruiz R, Rigoulet M, Devin A . The Warburg and Crabtree effects: On the origin of cancer cell energy metabolism and of yeast glucose repression. Biochim Biophys Acta. 2010; 1807(6):568-76. DOI: 10.1016/j.bbabio.2010.08.010. View

3.
Gombert A, Moreira dos Santos M, Christensen B, Nielsen J . Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression. J Bacteriol. 2001; 183(4):1441-51. PMC: 95019. DOI: 10.1128/JB.183.4.1441-1451.2001. View

4.
MacIsaac K, Wang T, Gordon D, Gifford D, Stormo G, Fraenkel E . An improved map of conserved regulatory sites for Saccharomyces cerevisiae. BMC Bioinformatics. 2006; 7:113. PMC: 1435934. DOI: 10.1186/1471-2105-7-113. View

5.
Li Q, Burgess R, Zhang Z . All roads lead to chromatin: Multiple pathways for histone deposition. Biochim Biophys Acta. 2011; 1819(3-4):238-46. PMC: 3932183. DOI: 10.1016/j.bbagrm.2011.06.013. View