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Arginine: Its PKa Value Revisited

Overview
Journal Protein Sci
Specialty Biochemistry
Date 2015 Mar 27
PMID 25808204
Citations 119
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Abstract

Using complementary approaches of potentiometry and NMR spectroscopy, we have determined that the equilibrium acid dissociation constant (pKa value) of the arginine guanidinium group is 13.8 ± 0.1. This is substantially higher than that of ∼ 12 often used in structure-based electrostatics calculations and cited in biochemistry textbooks. The revised intrinsic pKa value helps explains why arginine side chains in proteins are always predominantly charged, even at pH values as great as 10. The high pKa value also reinforces the observation that arginine side chains are invariably protonated under physiological conditions of near neutral pH. This occurs even when the guanidinium moiety is buried in a hydrophobic micro-environment, such as that inside a protein or a lipid membrane, thought to be incompatible with the presence of a charged group.

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References
1.
Wishart D, Bigam C, Yao J, Abildgaard F, Dyson H, Oldfield E . 1H, 13C and 15N chemical shift referencing in biomolecular NMR. J Biomol NMR. 1995; 6(2):135-40. DOI: 10.1007/BF00211777. View

2.
Isom D, Castaneda C, Cannon B, Velu P, Garcia-Moreno E B . Charges in the hydrophobic interior of proteins. Proc Natl Acad Sci U S A. 2010; 107(37):16096-100. PMC: 2941338. DOI: 10.1073/pnas.1004213107. View

3.
Platzer G, Okon M, McIntosh L . pH-dependent random coil (1)H, (13)C, and (15)N chemical shifts of the ionizable amino acids: a guide for protein pK a measurements. J Biomol NMR. 2014; 60(2-3):109-29. DOI: 10.1007/s10858-014-9862-y. View

4.
Isom D, Castaneda C, Cannon B, Garcia-Moreno B . Large shifts in pKa values of lysine residues buried inside a protein. Proc Natl Acad Sci U S A. 2011; 108(13):5260-5. PMC: 3069169. DOI: 10.1073/pnas.1010750108. View

5.
Yavari I, Roberts J . Differential rates of proton exchange for the guanidinium nitrogens of L-arginine determined by natural-abundance nitrogen-15 nuclear magnetic resonance spectroscopy. Biochem Biophys Res Commun. 1978; 83(2):635-40. DOI: 10.1016/0006-291x(78)91037-9. View