GenoBase: Comprehensive Resource Database of Escherichia Coli K-12

Overview

Journal Nucleic Acids Res

Publisher Oxford University Press

Specialty Biochemistry

Date 2014 Nov 17

PMID 25399415

Citations 21

Authors

Yuta Otsuka

Ai Muto

Rikiya Takeuchi

Chihiro Okada

Motokazu Ishikawa

Koichiro Nakamura

Natsuko Yamamoto

Hitomi Dose

Kenji Nakahigashi

Shigeki Tanishima

Sivasundaram Suharnan

Wataru Nomura

Toru Nakayashiki

Walid G Aref

Barry R Bochner

Tyrrell Conway

Michael Gribskov

Daisuke Kihara

Kenneth E Rudd

Yukako Tohsato

Barry L Wanner

Hirotada Mori

Affiliations

Soon will be listed here.

Abstract

Comprehensive experimental resources, such as ORFeome clone libraries and deletion mutant collections, are fundamental tools for elucidation of gene function. Data sets by omics analysis using these resources provide key information for functional analysis, modeling and simulation both in individual and systematic approaches. With the long-term goal of complete understanding of a cell, we have over the past decade created a variety of clone and mutant sets for functional genomics studies of Escherichia coli K-12. We have made these experimental resources freely available to the academic community worldwide. Accordingly, these resources have now been used in numerous investigations of a multitude of cell processes. Quality control is extremely important for evaluating results generated by these resources. Because the annotation has been changed since 2005, which we originally used for the construction, we have updated these genomic resources accordingly. Here, we describe GenoBase (http://ecoli.naist.jp/GB/), which contains key information about comprehensive experimental resources of E. coli K-12, their quality control and several omics data sets generated using these resources.

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