» Articles » PMID: 24930139

Circlize Implements and Enhances Circular Visualization in R

Overview
Journal Bioinformatics
Specialty Biology
Date 2014 Jun 16
PMID 24930139
Citations 1641
Authors
Affiliations
Soon will be listed here.
Abstract

Summary: Circular layout is an efficient way for the visualization of huge amounts of genomic information. Here we present the circlize package, which provides an implementation of circular layout generation in R as well as an enhancement of available software. The flexibility of this package is based on the usage of low-level graphics functions such that self-defined high-level graphics can be easily implemented by users for specific purposes. Together with the seamless connection between the powerful computational and visual environment in R, circlize gives users more convenience and freedom to design figures for better understanding genomic patterns behind multi-dimensional data.

Availability And Implementation: circlize is available at the Comprehensive R Archive Network (CRAN): http://cran.r-project.org/web/packages/circlize/

Citing Articles

Exploring the potential mechanisms of sorafenib resistance in hepatocellular carcinoma cell lines based on RNA sequencing.

Sun M, Zhang Z, Chen C, Zhong J, Long Z, Shen L Cancer Cell Int. 2025; 25(1):91.

PMID: 40082884 PMC: 11907981. DOI: 10.1186/s12935-025-03728-8.


Benchmarking long-read structural variant calling tools and combinations for detecting somatic variants in cancer genomes.

Aydin S, Yilmaz K, Acar A Sci Rep. 2025; 15(1):8707.

PMID: 40082509 PMC: 11906795. DOI: 10.1038/s41598-025-92750-x.


Chromosome-level genome assembly of the spangled emperor, Lethrinus nebulosus (Forsskål 1775).

Parata L, Anstiss L, de Jong E, Doran A, Edwards R, Newman S Sci Data. 2025; 12(1):435.

PMID: 40082478 PMC: 11906739. DOI: 10.1038/s41597-025-04690-w.


Identifying potential biomarkers and molecular mechanisms related to arachidonic acid metabolism in vitiligo.

Li X, Yang L, Zhu L, Sun J, Xu C, Sun L Front Mol Biosci. 2025; 12:1536477.

PMID: 40078960 PMC: 11896865. DOI: 10.3389/fmolb.2025.1536477.


Genome-Wide Identification and Expression Profiling of the Invertase Genes Involved in Sugar Metabolism and Accumulation in .

Qiang X, Ren T, Zhang Y, Jia Y Int J Mol Sci. 2025; 26(5).

PMID: 40076770 PMC: 11899927. DOI: 10.3390/ijms26052150.