» Articles » PMID: 24172921

High-resolution Flow Karyotyping and Chromosome Sorting in Vicia Faba Lines with Standard and Reconstructed Karyotypes

Overview
Publisher Springer
Specialty Genetics
Date 2013 Nov 1
PMID 24172921
Citations 14
Authors
Affiliations
Soon will be listed here.
Abstract

Flow cytometric analysis has been performed on chromosomes isolated from formaldehyde-fixed root tips in a Vicia faba (2n = 12) line with a standard (wild-type) karyotype and in six V. faba translocation lines with reconstructed karyotypes. The resolution of individual chromosome types on histograms of chromosome fluorescence intensity (flow karyotypes) depended on the type of fluorochrome used for chromosome staining. The highest degree of resolution was achieved with 4',6-diamidino-2-phenylindole (DAPI). The lower resolution obtained after staining with mithramycin A (MIT) and propidium iodide (PI) was probably due to the sensitivity of these stains to changes in chromatin structure induced by formaldehyde fixation. After the staining with DAPI, only 1 chromosome type could be discriminated in the line with a standard karyotype. In the translocation lines, the number of chromosome types resolved on flow karyotypes ranged from 2 in the G and the ACB lines to all (6) chromosome types in the EFK and EF lines. Refined flow karyotyping permitted the sorting of a total of 15 different chromosome types from five of the translocation lines. It is expected that flow sorting of chromosomes from reconstructed karyotypes will become a powerful tool in the study of nuclear genome organisation in V. faba.

Citing Articles

Genomic regions associated with chocolate spot ( Sard.) resistance in faba bean ( L.).

Gela T, Bruce M, Chang W, Stoddard F, Schulman A, Vandenberg A Mol Breed. 2023; 42(6):35.

PMID: 37312967 PMC: 10248645. DOI: 10.1007/s11032-022-01307-7.


Flow karyotyping of wheat- additions facilitate dissecting the genomes of and into individual chromosomes.

Said M, Capal P, Farkas A, Gaal E, Ivanizs L, Friebe B Front Plant Sci. 2022; 13:1017958.

PMID: 36262648 PMC: 9575658. DOI: 10.3389/fpls.2022.1017958.


Chromosome analysis and sorting.

Dolezel J, Lucretti S, Molnar I, Capal P, Giorgi D Cytometry A. 2021; 99(4):328-342.

PMID: 33615737 PMC: 8048479. DOI: 10.1002/cyto.a.24324.


Development of new genetic resources for faba bean (Vicia faba L.) breeding through the discovery of gene-based SNP markers and the construction of a high-density consensus map.

Carrillo-Perdomo E, Vidal A, Kreplak J, Duborjal H, Leveugle M, Duarte J Sci Rep. 2020; 10(1):6790.

PMID: 32321933 PMC: 7176738. DOI: 10.1038/s41598-020-63664-7.


Preparation of pea (Pisum sativum L.) chromosome and nucleus suspensions from single root tips.

Gualberti G, Dolezel J, Macas J, Lucretti S Theor Appl Genet. 2013; 92(6):744-51.

PMID: 24166399 DOI: 10.1007/BF00226097.


References
1.
Trask B, van den Engh G, Nussbaum R, Schwartz C, Gray J . Quantification of the DNA content of structurally abnormal X chromosomes and X chromosome aneuploidy using high resolution bivariate flow karyotyping. Cytometry. 1990; 11(1):184-95. DOI: 10.1002/cyto.990110121. View

2.
Dolezel J, Cihalikova J, Lucretti S . A high-yield procedure for isolation of metaphase chromosomes from root tips of Vicia faba L. Planta. 2013; 188(1):93-8. DOI: 10.1007/BF00198944. View

3.
Portugal J, Waring M . Assignment of DNA binding sites for 4',6-diamidine-2-phenylindole and bisbenzimide (Hoechst 33258). A comparative footprinting study. Biochim Biophys Acta. 1988; 949(2):158-68. DOI: 10.1016/0167-4781(88)90079-6. View

4.
Van Dilla M, Deaven L . Construction of gene libraries for each human chromosome. Cytometry. 1990; 11(1):208-18. DOI: 10.1002/cyto.990110124. View

5.
Wang M, Leitch A, Schwarzacher T, Heslop-Harrison J, Moore G . Construction of a chromosome-enriched HpaII library from flow-sorted wheat chromosomes. Nucleic Acids Res. 1992; 20(8):1897-901. PMC: 312304. DOI: 10.1093/nar/20.8.1897. View