A Single-stranded Junction Modulates Nanosecond Motional Ordering of the Substrate Recognition Duplex of a Group I Ribozyme
Overview
Affiliations
Rigid spinning: Site-directed spin-labeling studies using a rigid nitroxide spin label (Ç) reveal that both length and sequence of a single-stranded junction (J1/2) modulate nanosecond motional ordering of the substrate-recognition duplex (P1) of the 120 kD group I ribozyme. The studies demonstrate an approach for experimental measurements of nanosecond dynamics in high-molecular-weight RNA complexes.
Paramagnetic Chemical Probes for Studying Biological Macromolecules.
Miao Q, Nitsche C, Orton H, Overhand M, Otting G, Ubbink M Chem Rev. 2022; 122(10):9571-9642.
PMID: 35084831 PMC: 9136935. DOI: 10.1021/acs.chemrev.1c00708.
Wang Y, Kathiresan V, Chen Y, Hu Y, Jiang W, Bai G Chem Sci. 2020; 11(35):9655-9664.
PMID: 33224460 PMC: 7667596. DOI: 10.1039/d0sc01717e.
Tuning RNA Flexibility with Helix Length and Junction Sequence.
Sutton J, Pollack L Biophys J. 2015; 109(12):2644-2653.
PMID: 26682821 PMC: 4699881. DOI: 10.1016/j.bpj.2015.10.039.
A nucleotide-independent cyclic nitroxide label for monitoring segmental motions in nucleic acids.
Nguyen P, Popova A, Hideg K, Qin P BMC Biophys. 2015; 8:6.
PMID: 25897395 PMC: 4404236. DOI: 10.1186/s13628-015-0019-5.
Structural dynamics of a single-stranded RNA-helix junction using NMR.
Eichhorn C, Al-Hashimi H RNA. 2014; 20(6):782-91.
PMID: 24742933 PMC: 4024633. DOI: 10.1261/rna.043711.113.