» Articles » PMID: 23507778

Technologies for the Synthesis of MRNA-encoding Libraries and Discovery of Bioactive Natural Product-inspired Non-traditional Macrocyclic Peptides

Overview
Journal Molecules
Publisher MDPI
Specialty Biology
Date 2013 Mar 20
PMID 23507778
Citations 18
Authors
Affiliations
Soon will be listed here.
Abstract

In this review, we discuss emerging technologies for drug discovery, which yields novel molecular scaffolds based on natural product-inspired non-traditional peptides expressed using the translation machinery. Unlike natural products, these technologies allow for constructing mRNA-encoding libraries of macrocyclic peptides containing non-canonical sidechains and N-methyl-modified backbones. The complexity of sequence space in such libraries reaches as high as a trillion (>1012), affording initial hits of high affinity ligands against protein targets. Although this article comprehensively covers several related technologies, we discuss in greater detail the technical development and advantages of the Random non-standard Peptide Integration Discovery (RaPID) system, including the recent identification of inhibitors against various therapeutic targets.

Citing Articles

Strategies for the Construction of Multicyclic Phage Display Libraries.

Chen F, Pinnette N, Gao J Chembiochem. 2024; 25(9):e202400072.

PMID: 38466139 PMC: 11437370. DOI: 10.1002/cbic.202400072.


Peptide-to-Small Molecule: Discovery of Non-Covalent, Active-Site Inhibitors of β-Herpesvirus Proteases.

Yoshida S, Sako Y, Nikaido E, Ueda T, Kozono I, Ichihashi Y ACS Med Chem Lett. 2023; 14(11):1558-1566.

PMID: 37974946 PMC: 10641906. DOI: 10.1021/acsmedchemlett.3c00359.


Cell-Free PURE System: Evolution and Achievements.

Cui Y, Chen X, Wang Z, Lu Y Biodes Res. 2023; 2022:9847014.

PMID: 37850137 PMC: 10521753. DOI: 10.34133/2022/9847014.


Methods for generating and screening libraries of genetically encoded cyclic peptides in drug discovery.

Sohrabi C, Foster A, Tavassoli A Nat Rev Chem. 2023; 4(2):90-101.

PMID: 37128052 DOI: 10.1038/s41570-019-0159-2.


Brain Cancer Chemotherapy through a Delivery System across the Blood-Brain Barrier into the Brain Based on Receptor-Mediated Transcytosis Using Monoclonal Antibody Conjugates.

Tashima T Biomedicines. 2022; 10(7).

PMID: 35884906 PMC: 9313144. DOI: 10.3390/biomedicines10071597.


References
1.
Xiao H, Murakami H, Suga H, Ferre-DAmare A . Structural basis of specific tRNA aminoacylation by a small in vitro selected ribozyme. Nature. 2008; 454(7202):358-61. DOI: 10.1038/nature07033. View

2.
Hofmann F, Szostak J, Seebeck F . In vitro selection of functional lantipeptides. J Am Chem Soc. 2012; 134(19):8038-41. PMC: 3353655. DOI: 10.1021/ja302082d. View

3.
Sieber S, Marahiel M . Molecular mechanisms underlying nonribosomal peptide synthesis: approaches to new antibiotics. Chem Rev. 2005; 105(2):715-38. DOI: 10.1021/cr0301191. View

4.
Ohta A, Murakami H, Higashimura E, Suga H . Synthesis of polyester by means of genetic code reprogramming. Chem Biol. 2007; 14(12):1315-22. DOI: 10.1016/j.chembiol.2007.10.015. View

5.
Heinis C, Rutherford T, Freund S, Winter G . Phage-encoded combinatorial chemical libraries based on bicyclic peptides. Nat Chem Biol. 2009; 5(7):502-7. DOI: 10.1038/nchembio.184. View