» Articles » PMID: 21990429

Load-induced Modulation of Signal Transduction Networks

Overview
Journal Sci Signal
Date 2011 Oct 13
PMID 21990429
Citations 28
Authors
Affiliations
Soon will be listed here.
Abstract

Biological signal transduction networks are commonly viewed as circuits that pass along information--in the process amplifying signals, enhancing sensitivity, or performing other signal-processing tasks--to transcriptional and other components. Here, we report on a "reverse-causality" phenomenon, which we call load-induced modulation. Through a combination of analytical and experimental tools, we discovered that signaling was modulated, in a surprising way, by downstream targets that receive the signal and, in doing so, apply what in physics is called a load. Specifically, we found that non-intuitive changes in response dynamics occurred for a covalent modification cycle when load was present. Loading altered the response time of a system, depending on whether the activity of one of the enzymes was maximal and the other was operating at its minimal rate or whether both enzymes were operating at submaximal rates. These two conditions, which we call "limit regime" and "intermediate regime," were associated with increased or decreased response times, respectively. The bandwidth, the range of frequency in which the system can process information, decreased in the presence of load, suggesting that downstream targets participate in establishing a balance between noise-filtering capabilities and a circuit's ability to process high-frequency stimulation. Nodes in a signaling network are not independent relay devices, but rather are modulated by their downstream targets.

Citing Articles

Transient frequency preference responses in cell signaling systems.

Szischik C, Reves Szemere J, Balderrama R, Sanchez de la Vega C, Ventura A NPJ Syst Biol Appl. 2024; 10(1):86.

PMID: 39128915 PMC: 11317535. DOI: 10.1038/s41540-024-00413-w.


A programmable reaction-diffusion system for spatiotemporal cell signaling circuit design.

Rajasekaran R, Chang C, Weix E, Galateo T, Coyle S Cell. 2024; 187(2):345-359.e16.

PMID: 38181787 PMC: 10842744. DOI: 10.1016/j.cell.2023.12.007.


A nested bistable module within a negative feedback loop ensures different types of oscillations in signaling systems.

Marrone J, Sepulchre J, Ventura A Sci Rep. 2023; 13(1):529.

PMID: 36631477 PMC: 9834387. DOI: 10.1038/s41598-022-27047-4.


Frequency-preference response in covalent modification cycles under substrate sequestration conditions.

Reves Szemere J, Rotstein H, Ventura A NPJ Syst Biol Appl. 2021; 7(1):32.

PMID: 34404807 PMC: 8371027. DOI: 10.1038/s41540-021-00192-8.


Retroactivity induced operating regime transition in an enzymatic futile cycle.

Parundekar A, Viswanathan G PLoS One. 2021; 16(4):e0250830.

PMID: 33930059 PMC: 8087108. DOI: 10.1371/journal.pone.0250830.


References
1.
Ventura A, Sepulchre J, Merajver S . A hidden feedback in signaling cascades is revealed. PLoS Comput Biol. 2008; 4(3):e1000041. PMC: 2265423. DOI: 10.1371/journal.pcbi.1000041. View

2.
Jiang P, Peliska J, Ninfa A . Reconstitution of the signal-transduction bicyclic cascade responsible for the regulation of Ntr gene transcription in Escherichia coli. Biochemistry. 1998; 37(37):12795-801. DOI: 10.1021/bi9802420. View

3.
Kholodenko B, Hancock J, Kolch W . Signalling ballet in space and time. Nat Rev Mol Cell Biol. 2010; 11(6):414-26. PMC: 2977972. DOI: 10.1038/nrm2901. View

4.
Ventura A, Jiang P, Van Wassenhove L, Del Vecchio D, Merajver S, Ninfa A . Signaling properties of a covalent modification cycle are altered by a downstream target. Proc Natl Acad Sci U S A. 2010; 107(22):10032-7. PMC: 2890436. DOI: 10.1073/pnas.0913815107. View

5.
Dunlap J . Molecular bases for circadian clocks. Cell. 1999; 96(2):271-90. DOI: 10.1016/s0092-8674(00)80566-8. View