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Epigenome-wide Association Studies for Common Human Diseases

Overview
Journal Nat Rev Genet
Specialty Genetics
Date 2011 Jul 13
PMID 21747404
Citations 618
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Abstract

Despite the success of genome-wide association studies (GWASs) in identifying loci associated with common diseases, a substantial proportion of the causality remains unexplained. Recent advances in genomic technologies have placed us in a position to initiate large-scale studies of human disease-associated epigenetic variation, specifically variation in DNA methylation. Such epigenome-wide association studies (EWASs) present novel opportunities but also create new challenges that are not encountered in GWASs. We discuss EWAS design, cohort and sample selections, statistical significance and power, confounding factors and follow-up studies. We also discuss how integration of EWASs with GWASs can help to dissect complex GWAS haplotypes for functional analysis.

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References
1.
Christensen B, Houseman E, Marsit C, Zheng S, Wrensch M, Wiemels J . Aging and environmental exposures alter tissue-specific DNA methylation dependent upon CpG island context. PLoS Genet. 2009; 5(8):e1000602. PMC: 2718614. DOI: 10.1371/journal.pgen.1000602. View

2.
Li Y, Zhu J, Tian G, Li N, Li Q, Ye M . The DNA methylome of human peripheral blood mononuclear cells. PLoS Biol. 2010; 8(11):e1000533. PMC: 2976721. DOI: 10.1371/journal.pbio.1000533. View

3.
Ng S, Lin R, Laybutt D, Barres R, Owens J, Morris M . Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring. Nature. 2010; 467(7318):963-6. DOI: 10.1038/nature09491. View

4.
Lechner M, Boshoff C, Beck S . Cancer epigenome. Adv Genet. 2010; 70:247-76. DOI: 10.1016/B978-0-12-380866-0.60009-5. View

5.
Butcher L, Beck S . AutoMeDIP-seq: a high-throughput, whole genome, DNA methylation assay. Methods. 2010; 52(3):223-31. PMC: 2977854. DOI: 10.1016/j.ymeth.2010.04.003. View