Isenberg N, Mertins S, Yoon B, Reyes K, Urban N
Sci Rep. 2024; 14(1):15237.
PMID: 38956095
PMC: 11219779.
DOI: 10.1038/s41598-024-65196-w.
Taetz B, Lorenz M, Miezal M, Stricker D, Bleser-Taetz G
Open Res Eur. 2024; 4():33.
PMID: 38953016
PMC: 11216284.
DOI: 10.12688/openreseurope.16939.1.
Mostofinejad A, Romero D, Brinson D, Marin-Araujo A, Bazylak A, Waddell T
PLoS One. 2024; 19(5):e0300902.
PMID: 38748626
PMC: 11095723.
DOI: 10.1371/journal.pone.0300902.
Lam N, Murray R, Docherty P
Bull Math Biol. 2024; 86(6):70.
PMID: 38717656
PMC: 11078857.
DOI: 10.1007/s11538-024-01304-1.
Groves T, Cowie N, Nielsen L
ACS Synth Biol. 2024; 13(4):1205-1214.
PMID: 38579163
PMC: 11036490.
DOI: 10.1021/acssynbio.3c00662.
Minimally sufficient experimental design using identifiability analysis.
Gevertz J, Kareva I
NPJ Syst Biol Appl. 2024; 10(1):2.
PMID: 38184643
PMC: 10771435.
DOI: 10.1038/s41540-023-00325-1.
Likelihood-ratio test statistic for the finite-sample case in nonlinear ordinary differential equation models.
Tonsing C, Steiert B, Timmer J, Kreutz C
PLoS Comput Biol. 2023; 19(9):e1011417.
PMID: 37738254
PMC: 10550180.
DOI: 10.1371/journal.pcbi.1011417.
Delay-differential SEIR modeling for improved modelling of infection dynamics.
Kiselev I, Akberdin I, Kolpakov F
Sci Rep. 2023; 13(1):13439.
PMID: 37596296
PMC: 10439236.
DOI: 10.1038/s41598-023-40008-9.
Body-Worn IMU-Based Human Hip and Knee Kinematics Estimation during Treadmill Walking.
McGrath T, Stirling L
Sensors (Basel). 2022; 22(7).
PMID: 35408159
PMC: 9003309.
DOI: 10.3390/s22072544.
Reconstructing asynchrony for mechanical ventilation using a hysteresis loop virtual patient model.
Zhou C, Chase J, Sun Q, Knopp J, Tawhai M, Desaive T
Biomed Eng Online. 2022; 21(1):16.
PMID: 35255922
PMC: 8900099.
DOI: 10.1186/s12938-022-00986-9.
GAMES: A Dynamic Model Development Workflow for Rigorous Characterization of Synthetic Genetic Systems.
Dray K, Muldoon J, Mangan N, Bagheri N, Leonard J
ACS Synth Biol. 2022; 11(2):1009-1029.
PMID: 35023730
PMC: 9097825.
DOI: 10.1021/acssynbio.1c00528.
Assessing the role of initial conditions in the local structural identifiability of large dynamic models.
Joubert D, Stigter J, Molenaar J
Sci Rep. 2021; 11(1):16902.
PMID: 34413387
PMC: 8376890.
DOI: 10.1038/s41598-021-96293-9.
Body-Worn IMU Human Skeletal Pose Estimation Using a Factor Graph-Based Optimization Framework.
McGrath T, Stirling L
Sensors (Basel). 2020; 20(23).
PMID: 33276492
PMC: 7729748.
DOI: 10.3390/s20236887.
Estimation of neuron parameters from imperfect observations.
Taylor J, Winnall S, Nogaret A
PLoS Comput Biol. 2020; 16(7):e1008053.
PMID: 32673311
PMC: 7386621.
DOI: 10.1371/journal.pcbi.1008053.
BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.
Kolpakov F, Akberdin I, Kashapov T, Kiselev L, Kolmykov S, Kondrakhin Y
Nucleic Acids Res. 2019; 47(W1):W225-W233.
PMID: 31131402
PMC: 6602424.
DOI: 10.1093/nar/gkz440.
Determining minimal output sets that ensure structural identifiability.
Joubert D, Stigter J, Molenaar J
PLoS One. 2018; 13(11):e0207334.
PMID: 30419074
PMC: 6231658.
DOI: 10.1371/journal.pone.0207334.
Information sensitivity functions to assess parameter information gain and identifiability of dynamical systems.
Pant S
J R Soc Interface. 2018; 15(142).
PMID: 29769407
PMC: 6000172.
DOI: 10.1098/rsif.2017.0871.
A symbolic network-based nonlinear theory for dynamical systems observability.
Letellier C, Sendina-Nadal I, Bianco-Martinez E, Baptista M
Sci Rep. 2018; 8(1):3785.
PMID: 29491432
PMC: 5830642.
DOI: 10.1038/s41598-018-21967-w.
Windowed Granger causal inference strategy improves discovery of gene regulatory networks.
Finkle J, Wu J, Bagheri N
Proc Natl Acad Sci U S A. 2018; 115(9):2252-2257.
PMID: 29440433
PMC: 5834671.
DOI: 10.1073/pnas.1710936115.
Numerical simulation of vascular tumour growth under antiangiogenic treatment: addressing the paradigm of single-agent bevacizumab therapy with the use of experimental data.
Argyri K, Dionysiou D, Misichroni F, Stamatakos G
Biol Direct. 2016; 11(1):12.
PMID: 27005569
PMC: 4804544.
DOI: 10.1186/s13062-016-0114-9.