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G-quadruplex Structures in RNA Stimulate Mitochondrial Transcription Termination and Primer Formation

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Specialty Science
Date 2010 Aug 28
PMID 20798345
Citations 79
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Abstract

The human mitochondrial transcription machinery generates the primers required for initiation of leading-strand DNA replication. According to one model, the 3' end of the primer is defined by transcription termination at conserved sequence block II (CSB II) in the mitochondrial DNA control region. We here demonstrate that this site-specific termination event is caused by G-quadruplex structures formed in nascent RNA upon transcription of CSB II. We also demonstrate that a poly-dT stretch downstream of CSB II has a modest stimulatory effect on the termination efficiency. The mechanism is reminiscent of Rho-independent transcription termination in prokaryotes, with the exception that a G-quadruplex structure replaces the hairpin loop formed in bacterial mRNA during transcription of terminator sequences.

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References
1.
Xu B, Clayton D . A persistent RNA-DNA hybrid is formed during transcription at a phylogenetically conserved mitochondrial DNA sequence. Mol Cell Biol. 1995; 15(1):580-9. PMC: 232017. DOI: 10.1128/MCB.15.1.580. View

2.
Anderson S, Bankier A, Barrell B, de Bruijn M, Coulson A, Drouin J . Sequence and organization of the human mitochondrial genome. Nature. 1981; 290(5806):457-65. DOI: 10.1038/290457a0. View

3.
Eddy J, Maizels N . Gene function correlates with potential for G4 DNA formation in the human genome. Nucleic Acids Res. 2006; 34(14):3887-96. PMC: 1557811. DOI: 10.1093/nar/gkl529. View

4.
Pham X, Farge G, Shi Y, Gaspari M, Gustafsson C, Falkenberg M . Conserved sequence box II directs transcription termination and primer formation in mitochondria. J Biol Chem. 2006; 281(34):24647-52. DOI: 10.1074/jbc.M602429200. View

5.
Kuzmine I, Gottlieb P, Martin C . Structure in nascent RNA leads to termination of slippage transcription by T7 RNA polymerase. Nucleic Acids Res. 2001; 29(12):2601-6. PMC: 55752. DOI: 10.1093/nar/29.12.2601. View