Dai W, Qiao X, Fang Y, Guo R, Bai P, Liu S
Signal Transduct Target Ther. 2024; 9(1):332.
PMID: 39592582
PMC: 11627502.
DOI: 10.1038/s41392-024-02039-0.
Shams A
Diagnostics (Basel). 2024; 14(19).
PMID: 39410578
PMC: 11476216.
DOI: 10.3390/diagnostics14192174.
Petrany A, Chen R, Zhang S, Chen Y
Genome Res. 2024; 34(10):1636-1650.
PMID: 39406498
PMC: 11529838.
DOI: 10.1101/gr.278843.123.
Tao C, Liu T, Zhao Z, Dou X, Xia X, Du K
Int J Biol Sci. 2024; 20(12):4691-4712.
PMID: 39309447
PMC: 11414393.
DOI: 10.7150/ijbs.92607.
Omar M, Harrell J, Tamimi R, Marchionni L, Erdogan C, Nakshatri H
Breast Cancer Res. 2024; 26(1):132.
PMID: 39272208
PMC: 11395215.
DOI: 10.1186/s13058-024-01876-9.
Current development of molecular classifications of gastric cancer based on omics (Review).
Ma Y, Jiang Z, Pan L, Zhou Y, Xia R, Liu Z
Int J Oncol. 2024; 65(3).
PMID: 39092559
PMC: 11302956.
DOI: 10.3892/ijo.2024.5677.
A novel method for multiple phenotype association studies based on genotype and phenotype network.
Cao X, Zhang S, Sha Q
PLoS Genet. 2024; 20(5):e1011245.
PMID: 38728360
PMC: 11111089.
DOI: 10.1371/journal.pgen.1011245.
Prior knowledge-guided multilevel graph neural network for tumor risk prediction and interpretation via multi-omics data integration.
Yan H, Weng D, Li D, Gu Y, Ma W, Liu Q
Brief Bioinform. 2024; 25(3).
PMID: 38670157
PMC: 11052635.
DOI: 10.1093/bib/bbae184.
Classifying breast cancer using multi-view graph neural network based on multi-omics data.
Ren Y, Gao Y, Du W, Qiao W, Li W, Yang Q
Front Genet. 2024; 15:1363896.
PMID: 38444760
PMC: 10912483.
DOI: 10.3389/fgene.2024.1363896.
Betulinic acid arrests cell cycle at G2/M phase by up-regulating metallothionein 1G inhibiting proliferation of colon cancer cells.
Wang S, Zhang Y, Yang X, Wang K, Yang X, Zhang B
Heliyon. 2024; 10(1):e23833.
PMID: 38261922
PMC: 10797151.
DOI: 10.1016/j.heliyon.2023.e23833.
Representation and quantification of module activity from omics data with rROMA.
Najm M, Cornet M, Albergante L, Zinovyev A, Sermet-Gaudelus I, Stoven V
NPJ Syst Biol Appl. 2024; 10(1):8.
PMID: 38242871
PMC: 10799004.
DOI: 10.1038/s41540-024-00331-x.
Conserved and divergent gene regulatory programs of the mammalian neocortex.
Zemke N, Armand E, Wang W, Lee S, Zhou J, Li Y
Nature. 2023; 624(7991):390-402.
PMID: 38092918
PMC: 10719095.
DOI: 10.1038/s41586-023-06819-6.
RgnTX: Colocalization analysis of transcriptome elements in the presence of isoform heterogeneity and ambiguity.
Wang Y, Wei Z, Su J, Coenen F, Meng J
Comput Struct Biotechnol J. 2023; 21:4110-4117.
PMID: 37671241
PMC: 10475473.
DOI: 10.1016/j.csbj.2023.08.021.
Identification and validation of cardiac nonconserved human-specific enhancers.
Zhang Y, Gui Y, Chen X, Wang F, Wu F, Wang Y
Genes Dis. 2023; 10(1):55-57.
PMID: 37013061
PMC: 10066254.
DOI: 10.1016/j.gendis.2022.03.005.
SADLN: Self-attention based deep learning network of integrating multi-omics data for cancer subtype recognition.
Sun Q, Cheng L, Meng A, Ge S, Chen J, Zhang L
Front Genet. 2023; 13:1032768.
PMID: 36685873
PMC: 9846505.
DOI: 10.3389/fgene.2022.1032768.
Interdisciplinary Overview of Lipopeptide and Protein-Containing Biosurfactants.
Antonioli Junior R, Poloni J, Pinto E, Dorn M
Genes (Basel). 2023; 14(1).
PMID: 36672817
PMC: 9859011.
DOI: 10.3390/genes14010076.
EDomics: a comprehensive and comparative multi-omics database for animal evo-devo.
Wei J, Liu P, Liu F, Jiang A, Qiao J, Pu Z
Nucleic Acids Res. 2022; 51(D1):D913-D923.
PMID: 36318263
PMC: 9825439.
DOI: 10.1093/nar/gkac944.
Gastric cancer and genomics: review of literature.
Onoyama T, Ishikawa S, Isomoto H
J Gastroenterol. 2022; 57(8):505-516.
PMID: 35751736
PMC: 9308599.
DOI: 10.1007/s00535-022-01879-3.
Genome-wide transcriptome profiling of human trabecular meshwork cells treated with TGF-β2.
Callaghan B, Lester K, Lane B, Fan X, Goljanek-Whysall K, Simpson D
Sci Rep. 2022; 12(1):9564.
PMID: 35689009
PMC: 9187693.
DOI: 10.1038/s41598-022-13573-8.
Connectivity in eQTL networks dictates reproducibility and genomic properties.
Gaynor S, Fagny M, Lin X, Platig J, Quackenbush J
Cell Rep Methods. 2022; 2(5):100218.
PMID: 35637906
PMC: 9142682.
DOI: 10.1016/j.crmeth.2022.100218.