» Articles » PMID: 19564682

Unit-cell Determination from Randomly Oriented Electron-diffraction Patterns

Overview
Specialty Chemistry
Date 2009 Jul 1
PMID 19564682
Citations 11
Authors
Affiliations
Soon will be listed here.
Abstract

Unit-cell determination is the first step towards the structure solution of an unknown crystal form. Standard procedures for unit-cell determination cannot cope with data collections that consist of single diffraction patterns of multiple crystals, each with an unknown orientation. However, for beam-sensitive nanocrystals these are often the only data that can be obtained. An algorithm for unit-cell determination that uses randomly oriented electron-diffraction patterns with unknown angular relationships is presented here. The algorithm determined the unit cells of mineral, pharmaceutical and protein nanocrystals in orthorhombic high- and low-symmetry space groups, allowing (well oriented) patterns to be indexed.

Citing Articles

Unit-cell parameters determination from a set of independent electron diffraction zonal patterns.

Gorelik T, Miehe G, Bucker R, Yoshida K Acta Crystallogr A Found Adv. 2025; 81(Pt 2):124-136.

PMID: 39886756 PMC: 11873814. DOI: 10.1107/S2053273325000300.


Serial Electron Diffraction Data Processing With diffractem and CrystFEL.

Bucker R, Hogan-Lamarre P, Miller R Front Mol Biosci. 2021; 8:624264.

PMID: 34095217 PMC: 8171297. DOI: 10.3389/fmolb.2021.624264.


Serial protein crystallography in an electron microscope.

Bucker R, Hogan-Lamarre P, Mehrabi P, Schulz E, Bultema L, Gevorkov Y Nat Commun. 2020; 11(1):996.

PMID: 32081905 PMC: 7035385. DOI: 10.1038/s41467-020-14793-0.


MicroED methodology and development.

Nannenga B Struct Dyn. 2020; 7(1):014304.

PMID: 32071929 PMC: 7018523. DOI: 10.1063/1.5128226.


The cryo-EM method microcrystal electron diffraction (MicroED).

Nannenga B, Gonen T Nat Methods. 2019; 16(5):369-379.

PMID: 31040436 PMC: 6568260. DOI: 10.1038/s41592-019-0395-x.


References
1.
Biswal B, Sukumar N, Vijayan M . Hydration, mobility and accessibility of lysozyme: structures of a pH 6.5 orthorhombic form and its low-humidity variant and a comparative study involving 20 crystallographically independent molecules. Acta Crystallogr D Biol Crystallogr. 2000; 56(Pt 9):1110-9. DOI: 10.1107/s0907444900008866. View

2.
Georgieva D, Kuil M, Oosterkamp T, Zandbergen H, Abrahams J . Heterogeneous nucleation of three-dimensional protein nanocrystals. Acta Crystallogr D Biol Crystallogr. 2007; 63(Pt 5):564-70. DOI: 10.1107/S0907444907007810. View

3.
DEXTER D, van der Veen J . Conformations of penicillin G: crystal structure of procaine penicillin G monohydrate and a refinement of the structure of potassium penicillin G. J Chem Soc Perkin 1. 1978; 3:185-90. DOI: 10.1039/p19780000185. View

4.
Plaisier J, Jiang L, Abrahams J . Cyclops: new modular software suite for cryo-EM. J Struct Biol. 2006; 157(1):19-27. DOI: 10.1016/j.jsb.2006.07.002. View

5.
Kolb U, Gorelik T, Otten M . Towards automated diffraction tomography. Part II--Cell parameter determination. Ultramicroscopy. 2008; 108(8):763-72. DOI: 10.1016/j.ultramic.2007.12.002. View