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Revisiting the Principles of MicroRNA Target Recognition and Mode of Action

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Date 2009 Jan 16
PMID 19145236
Citations 319
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Abstract

MicroRNAs (miRNAs) are fundamental regulatory elements of animal and plant gene expression. Although rapid progress in our understanding of miRNA biogenesis has been achieved by experimentation, computational approaches have also been influential in determining the general principles that are thought to govern miRNA target recognition and mode of action. We discuss how these principles are being progressively challenged by genetic and biochemical studies. In addition, we discuss the role of target-site-specific endonucleolytic cleavage, which is the hallmark of experimental RNA interference and a mechanism that is used by plant miRNAs and a few animal miRNAs. Generally thought to be merely a degradation mechanism, we propose that this might also be a biogenesis mechanism for biologically functional, non-coding RNA fragments.

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References
1.
Kedde M, Strasser M, Boldajipour B, Vrielink J, Slanchev K, le Sage C . RNA-binding protein Dnd1 inhibits microRNA access to target mRNA. Cell. 2007; 131(7):1273-86. DOI: 10.1016/j.cell.2007.11.034. View

2.
Itaya A, Zhong X, Bundschuh R, Qi Y, Wang Y, Takeda R . A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation. J Virol. 2007; 81(6):2980-94. PMC: 1865973. DOI: 10.1128/JVI.02339-06. View

3.
Martinez J, Tuschl T . RISC is a 5' phosphomonoester-producing RNA endonuclease. Genes Dev. 2004; 18(9):975-80. PMC: 406288. DOI: 10.1101/gad.1187904. View

4.
Aukerman M, Sakai H . Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes. Plant Cell. 2003; 15(11):2730-41. PMC: 280575. DOI: 10.1105/tpc.016238. View

5.
Selbach M, Schwanhausser B, Thierfelder N, Fang Z, Khanin R, Rajewsky N . Widespread changes in protein synthesis induced by microRNAs. Nature. 2008; 455(7209):58-63. DOI: 10.1038/nature07228. View