Krysenko S
BioTech (Basel). 2025; 14(1.
PMID: 39846552
PMC: 11755657.
DOI: 10.3390/biotech14010003.
Yue X, Sheng D, Zhuo L, Li Y
Eng Microbiol. 2024; 3(2):100075.
PMID: 39629250
PMC: 11610982.
DOI: 10.1016/j.engmic.2023.100075.
Tiwari A, Krisnawati D, Susilowati E, Mutalik C, Kuo T
J Agric Food Chem. 2024; 72(50):27679-27700.
PMID: 39588716
PMC: 11660543.
DOI: 10.1021/acs.jafc.4c08702.
Soroczynski J, Anderson L, Yeung J, Rendleman J, Oren D, Konishi H
bioRxiv. 2024; .
PMID: 39026714
PMC: 11257509.
DOI: 10.1101/2024.07.11.602973.
Kobbing S, Lechtenberg T, Wynands B, Blank L, Wierckx N
ACS Synth Biol. 2024; 13(7):2060-2072.
PMID: 38968167
PMC: 11264328.
DOI: 10.1021/acssynbio.3c00747.
From parasites to partners: exploring the intricacies of host-transposon dynamics and coevolution.
Chakrabarty P, Sen R, Sengupta S
Funct Integr Genomics. 2023; 23(3):278.
PMID: 37610667
DOI: 10.1007/s10142-023-01206-w.
The modular pYT vector series employed for chromosomal gene integration and expression to produce carbazoles and glycolipids in .
Weihmann R, Kubicki S, Bitzenhofer N, Domrose A, Bator I, Kirschen L
FEMS Microbes. 2023; 4:xtac030.
PMID: 37333445
PMC: 10117823.
DOI: 10.1093/femsmc/xtac030.
Correction of transposase sequence bias in ATAC-seq data with rule ensemble modeling.
Wolpe J, Martins A, Guertin M
NAR Genom Bioinform. 2023; 5(2):lqad054.
PMID: 37274120
PMC: 10236359.
DOI: 10.1093/nargab/lqad054.
Large-scale genetic characterization of the model sulfate-reducing bacterium, Hildenborough.
Trotter V, Shatsky M, Price M, Juba T, Zane G, De Leon K
Front Microbiol. 2023; 14:1095191.
PMID: 37065130
PMC: 10102598.
DOI: 10.3389/fmicb.2023.1095191.
Enabling low-cost and robust essentiality studies with high-throughput transposon mutagenesis (HTTM).
Champie A, De Grandmaison A, Jeanneau S, Grenier F, Jacques P, Rodrigue S
PLoS One. 2023; 18(4):e0283990.
PMID: 37040373
PMC: 10089323.
DOI: 10.1371/journal.pone.0283990.
Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seq.
Kim S, Marinov G, Bagdatli S, Higashino S, Shipony Z, Kundaje A
Methods Mol Biol. 2023; 2611:187-230.
PMID: 36807070
DOI: 10.1007/978-1-0716-2899-7_11.
Construction of high-density transposon mutant library of Staphylococcus aureus using bacteriophage ϕ11.
Lee W
J Microbiol. 2022; 60(12):1123-1129.
PMID: 36422842
DOI: 10.1007/s12275-022-2476-2.
Past, Present, and Future of Genome Modification in .
Mori H, Kataoka M, Yang X
Microorganisms. 2022; 10(9).
PMID: 36144436
PMC: 9504249.
DOI: 10.3390/microorganisms10091835.
Typical Enhancers, Super-Enhancers, and Cancers.
Koutsi M, Pouliou M, Champezou L, Vatsellas G, Giannopoulou A, Piperi C
Cancers (Basel). 2022; 14(18).
PMID: 36139535
PMC: 9496678.
DOI: 10.3390/cancers14184375.
Multiplexed Assembly and Annotation of Synthetic Biology Constructs Using Long-Read Nanopore Sequencing.
Emiliani F, Hsu I, McKenna A
ACS Synth Biol. 2022; 11(7):2238-2246.
PMID: 35695379
PMC: 9295152.
DOI: 10.1021/acssynbio.2c00126.
Fast and highly sensitive full-length single-cell RNA sequencing using FLASH-seq.
Hahaut V, Pavlinic D, Carbone W, Schuierer S, Balmer P, Quinodoz M
Nat Biotechnol. 2022; 40(10):1447-1451.
PMID: 35637419
PMC: 9546769.
DOI: 10.1038/s41587-022-01312-3.
Transposon insertion site sequencing (TIS) of Pseudomonas aeruginosa.
Cho H
J Microbiol. 2021; 59(12):1067-1074.
PMID: 34865196
DOI: 10.1007/s12275-021-1565-y.
Comprehensive understanding of Tn5 insertion preference improves transcription regulatory element identification.
Zhang H, Lu T, Liu S, Yang J, Sun G, Cheng T
NAR Genom Bioinform. 2021; 3(4):lqab094.
PMID: 34729473
PMC: 8557372.
DOI: 10.1093/nargab/lqab094.
Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin.
Tedesco M, Giannese F, Lazarevic D, Giansanti V, Rosano D, Monzani S
Nat Biotechnol. 2021; 40(2):235-244.
PMID: 34635836
DOI: 10.1038/s41587-021-01031-1.
Tagmentation-based single-cell genomics.
Adey A
Genome Res. 2021; 31(10):1693-1705.
PMID: 34599003
PMC: 8494221.
DOI: 10.1101/gr.275223.121.
