Gholipour Z, Fooladi A, Parivar K
Iran J Pathol. 2024; 19(2):193-204.
PMID: 39118800
PMC: 11304462.
DOI: 10.30699/IJP.2024.2014231.3200.
Dong S, Xuan J, Feng Y, Cui Q
J Biol Chem. 2024; 300(2):105635.
PMID: 38199576
PMC: 10869282.
DOI: 10.1016/j.jbc.2024.105635.
Caruso Bavisotto C, Provenzano A, Passantino R, Marino Gammazza A, Cappello F, San Biagio P
Int J Mol Sci. 2023; 24(9).
PMID: 37175554
PMC: 10177986.
DOI: 10.3390/ijms24097847.
Guo X, Du Y, Tadepalli S, Zhao L, Shehu A
Bioinform Adv. 2023; 1(1):vbab036.
PMID: 36700110
PMC: 9710582.
DOI: 10.1093/bioadv/vbab036.
Rahman T, Du Y, Zhao L, Shehu A
Molecules. 2021; 26(5).
PMID: 33668217
PMC: 7956369.
DOI: 10.3390/molecules26051209.
Coupling Monte Carlo, Variational Implicit Solvation, and Binary Level-Set for Simulations of Biomolecular Binding.
Zhang Z, Ricci C, Fan C, Cheng L, Li B, McCammon J
J Chem Theory Comput. 2021; 17(4):2465-2478.
PMID: 33650860
PMC: 8817676.
DOI: 10.1021/acs.jctc.0c01109.
Reducing Ensembles of Protein Tertiary Structures Generated De Novo via Clustering.
Zaman A, Kamranfar P, Domeniconi C, Shehu A
Molecules. 2020; 25(9).
PMID: 32397410
PMC: 7248879.
DOI: 10.3390/molecules25092228.
Conformational Studies of Oligosaccharides.
Yu Y, Delbianco M
Chemistry. 2020; 26(44):9814-9825.
PMID: 32329095
PMC: 7496230.
DOI: 10.1002/chem.202001370.
Evaluating Autoencoder-Based Featurization and Supervised Learning for Protein Decoy Selection.
Alam F, Rahman T, Shehu A
Molecules. 2020; 25(5).
PMID: 32143444
PMC: 7179114.
DOI: 10.3390/molecules25051146.
Binding site plasticity in viral PPxY Late domain recognition by the third WW domain of human NEDD4.
Iglesias-Bexiga M, Palencia A, Corbi-Verge C, Martin-Malpartida P, Blanco F, Macias M
Sci Rep. 2019; 9(1):15076.
PMID: 31636332
PMC: 6803667.
DOI: 10.1038/s41598-019-50701-3.
Unsupervised and Supervised Learning over theEnergy Landscape for Protein Decoy Selection.
Akhter N, Chennupati G, Kabir K, Djidjev H, Shehu A
Biomolecules. 2019; 9(10).
PMID: 31615116
PMC: 6843838.
DOI: 10.3390/biom9100607.
Modeling the Tertiary Structure of the Rift Valley Fever Virus L Protein.
Gogovi G, Almsned F, Bracci N, Kehn-Hall K, Shehu A, Blaisten-Barojas E
Molecules. 2019; 24(9).
PMID: 31067727
PMC: 6539450.
DOI: 10.3390/molecules24091768.
Balancing multiple objectives in conformation sampling to control decoy diversity in template-free protein structure prediction.
Zaman A, Shehu A
BMC Bioinformatics. 2019; 20(1):211.
PMID: 31023237
PMC: 6485169.
DOI: 10.1186/s12859-019-2794-5.
Hydrodynamic Behavior of the Intrinsically Disordered Potyvirus Protein VPg, of the Translation Initiation Factor eIF4E and of their Binary Complex.
Walter J, Barra A, Doublet B, Cere N, Charon J, Michon T
Int J Mol Sci. 2019; 20(7).
PMID: 30978975
PMC: 6479716.
DOI: 10.3390/ijms20071794.
Graph-Based Community Detection for Decoy Selection in Template-Free Protein Structure Prediction.
Kabir K, Hassan L, Rajabi Z, Akhter N, Shehu A
Molecules. 2019; 24(5).
PMID: 30823390
PMC: 6429114.
DOI: 10.3390/molecules24050854.
Comparative analysis of mutational robustness of the intrinsically disordered viral protein VPg and of its interactor eIF4E.
Walter J, Charon J, Hu Y, Lachat J, Leger T, Lafforgue G
PLoS One. 2019; 14(2):e0211725.
PMID: 30763345
PMC: 6375565.
DOI: 10.1371/journal.pone.0211725.
Mechanism of actin polymerization revealed by cryo-EM structures of actin filaments with three different bound nucleotides.
Chou S, Pollard T
Proc Natl Acad Sci U S A. 2019; 116(10):4265-4274.
PMID: 30760599
PMC: 6410863.
DOI: 10.1073/pnas.1807028115.
Atomistic Analysis of ToxN and ToxI Complex Unbinding Mechanism.
Hu G, Yu X, Bian Y, Cao Z, Xu S, Zhao L
Int J Mol Sci. 2018; 19(11).
PMID: 30423909
PMC: 6275071.
DOI: 10.3390/ijms19113524.
From mutations to mechanisms and dysfunction via computation and mining of protein energy landscapes.
Qiao W, Akhter N, Fang X, Maximova T, Plaku E, Shehu A
BMC Genomics. 2018; 19(Suppl 7):671.
PMID: 30255791
PMC: 6156908.
DOI: 10.1186/s12864-018-5024-z.
From Extraction of Local Structures of Protein Energy Landscapes to Improved Decoy Selection in Template-Free Protein Structure Prediction.
Akhter N, Shehu A
Molecules. 2018; 23(1).
PMID: 29351266
PMC: 6017496.
DOI: 10.3390/molecules23010216.
