» Articles » PMID: 18077411

Real-time Observation of Bacteriophage T4 Gp41 Helicase Reveals an Unwinding Mechanism

Overview
Specialty Science
Date 2007 Dec 14
PMID 18077411
Citations 84
Authors
Affiliations
Soon will be listed here.
Abstract

Helicases are enzymes that couple ATP hydrolysis to the unwinding of double-stranded (ds) nucleic acids. The bacteriophage T4 helicase (gp41) is a hexameric helicase that promotes DNA replication within a highly coordinated protein complex termed the replisome. Despite recent progress, the gp41 unwinding mechanism and regulatory interactions within the replisome remain unclear. Here we use a single tethered DNA hairpin as a real-time reporter of gp41-mediated dsDNA unwinding and single-stranded (ss) DNA translocation with 3-base pair (bp) resolution. Although gp41 translocates on ssDNA as fast as the in vivo replication fork ( approximately 400 bp/s), its unwinding rate extrapolated to zero force is much slower ( approximately 30 bp/s). Together, our results have two implications: first, gp41 unwinds DNA through a passive mechanism; second, this weak helicase cannot efficiently unwind the T4 genome alone. Our results suggest that important regulations occur within the replisome to achieve rapid and processive replication.

Citing Articles

Primase promotes the competition between transcription and replication on the same template strand resulting in DNA damage.

Zhang W, Yang Z, Wang W, Sun Q Nat Commun. 2024; 15(1):73.

PMID: 38168108 PMC: 10761990. DOI: 10.1038/s41467-023-44443-0.


Helicase Activity Modulation with On-Demand Light-Based Conformational Control.

Bobrovnikov D, Makurath M, Wolfe C, Chemla Y, Ha T J Am Chem Soc. 2023; 145(39):21253-21262.

PMID: 37739407 PMC: 10557133. DOI: 10.1021/jacs.3c05254.


Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.

Feng X, Spiering M, de Luna Almeida Santos R, Benkovic S, Li H Nat Commun. 2023; 14(1):4396.

PMID: 37474605 PMC: 10359460. DOI: 10.1038/s41467-023-40106-2.


Structural basis of the T4 bacteriophage primosome assembly and primer synthesis.

Feng X, Spiering M, de Luna Almeida Santos R, Benkovic S, Li H bioRxiv. 2023; .

PMID: 37205424 PMC: 10187150. DOI: 10.1101/2023.05.03.539249.


Unravelling How Single-Stranded DNA Binding Protein Coordinates DNA Metabolism Using Single-Molecule Approaches.

Xu L, Halma M, Wuite G Int J Mol Sci. 2023; 24(3).

PMID: 36769124 PMC: 9917605. DOI: 10.3390/ijms24032806.


References
1.
von Hippel P, Delagoutte E . A general model for nucleic acid helicases and their "coupling" within macromolecular machines. Cell. 2001; 104(2):177-90. DOI: 10.1016/s0092-8674(01)00203-3. View

2.
Fischer C, Maluf N, Lohman T . Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA. J Mol Biol. 2004; 344(5):1287-309. DOI: 10.1016/j.jmb.2004.10.005. View

3.
SCHROCK R, Alberts B . Processivity of the gene 41 DNA helicase at the bacteriophage T4 DNA replication fork. J Biol Chem. 1996; 271(28):16678-82. DOI: 10.1074/jbc.271.28.16678. View

4.
Dong F, Weitzel S, von Hippel P . A coupled complex of T4 DNA replication helicase (gp41) and polymerase (gp43) can perform rapid and processive DNA strand-displacement synthesis. Proc Natl Acad Sci U S A. 1996; 93(25):14456-61. PMC: 26154. DOI: 10.1073/pnas.93.25.14456. View

5.
Maier B, Zhang Y, Peliti M, Bensimon D, Croquette V . Stretching single stranded DNA, a model polyelectrolyte. Phys Rev Lett. 2002; 89(24):248102. DOI: 10.1103/PhysRevLett.89.248102. View