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Bipartite Signal for Read-through Suppression in Murine Leukemia Virus MRNA: an Eight-nucleotide Purine-rich Sequence Immediately Downstream of the Gag Termination Codon Followed by an RNA Pseudoknot

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Journal J Virol
Date 1992 Aug 1
PMID 1629968
Citations 58
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Abstract

The pol gene of murine leukemia virus and other mammalian type C retroviruses is expressed by read-through suppression of an in-frame UAG codon which separates the gag and pol coding regions. In this study, we have analyzed the sequence requirements for read-through suppression by placing different portions of wild-type and mutant viral sequences from the gag-pol junction between reporter genes and testing transcripts of these constructs for suppression in reticulocyte lysates. We find that the read-through signal is contained within the first 57 nucleotides on the 3' side of the UAG codon. Our results indicate that the identities of six conserved bases in the eight-nucleotide, purine-rich sequence immediately downstream of the UAG codon are critical for suppression, as is the existence of a pseudoknot structure spanning the next 49 nucleotides. Thus, read-through suppression depends on a complex, bipartite signal in the mRNA.

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References
1.
Brierley I, Digard P, Inglis S . Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot. Cell. 1989; 57(4):537-47. PMC: 7133225. DOI: 10.1016/0092-8674(89)90124-4. View

2.
Feng Y, Hatfield D, Rein A, LEVIN J . Translational readthrough of the murine leukemia virus gag gene amber codon does not require virus-induced alteration of tRNA. J Virol. 1989; 63(5):2405-10. PMC: 250668. DOI: 10.1128/JVI.63.5.2405-2410.1989. View

3.
Pleij C, Rietveld K, Bosch L . A new principle of RNA folding based on pseudoknotting. Nucleic Acids Res. 1985; 13(5):1717-31. PMC: 341107. DOI: 10.1093/nar/13.5.1717. View

4.
Pleij C . Pseudoknots: a new motif in the RNA game. Trends Biochem Sci. 1990; 15(4):143-7. DOI: 10.1016/0968-0004(90)90214-v. View

5.
Weaver T, Talbot K, Panganiban A . Spleen necrosis virus gag polyprotein is necessary for particle assembly and release but not for proteolytic processing. J Virol. 1990; 64(6):2642-52. PMC: 249442. DOI: 10.1128/JVI.64.6.2642-2652.1990. View