» Articles » PMID: 16188473

Effective Rotational Correlation Times of Proteins from NMR Relaxation Interference

Overview
Journal J Magn Reson
Publisher Elsevier
Date 2005 Sep 29
PMID 16188473
Citations 152
Authors
Affiliations
Soon will be listed here.
Abstract

Knowledge of the effective rotational correlation times, tauc, for the modulation of anisotropic spin-spin interactions in macromolecules subject to Brownian motion in solution is of key interest for the practice of NMR spectroscopy in structural biology. The value of tauc enables an estimate of the NMR spin relaxation rates, and indicates possible aggregation of the macromolecular species. This paper reports a novel NMR pulse scheme, [15N,1H]-TRACT, which is based on transverse relaxation-optimized spectroscopy and permits to determine tauc for 15N-1H bonds without interference from dipole-dipole coupling of the amide proton with remote protons. [15N,1H]-TRACT is highly efficient since only a series of one-dimensional NMR spectra need to be recorded. Its use is suggested for a quick estimate of the rotational correlation time, to monitor sample quality and to determine optimal parameters for complex multidimensional NMR experiments. Practical applications are illustrated with the 110 kDa 7,8-dihydroneopterin aldolase from Staphylococcus aureus, the uniformly 15N-labeled Escherichia coli outer membrane protein X (OmpX) in 60 kDa mixed OmpX/DHPC micelles with approximately 90 molecules of unlabeled 1,2-dihexanoyl-sn-glycero-3-phosphocholine (DHPC), and the 16 kDa pheromone-binding protein from Bombyx mori, which cover a wide range of correlation times.

Citing Articles

Extremophilic hemoglobins: The structure of Shewanella benthica truncated hemoglobin N.

Martinez Grundman J, Schultz T, Schlessman J, Johnson E, Gillilan R, Lecomte J J Biol Chem. 2025; 301(3):108223.

PMID: 39864624 PMC: 11904497. DOI: 10.1016/j.jbc.2025.108223.


Communication between DNA polymerases and Replication Protein A within the archaeal replisome.

Martinez-Carranza M, Vialle L, Madru C, Cordier F, Tekpinar A, Haouz A Nat Commun. 2024; 15(1):10926.

PMID: 39738083 PMC: 11686378. DOI: 10.1038/s41467-024-55365-w.


Determinants of chemoselectivity in ubiquitination by the J2 family of ubiquitin-conjugating enzymes.

Swarnkar A, Leidner F, Rout A, Ainatzi S, Schmidt C, Becker S EMBO J. 2024; 43(24):6705-6739.

PMID: 39533056 PMC: 11649903. DOI: 10.1038/s44318-024-00301-3.


Characterizing the Monomer-Dimer Equilibrium of UbcH8/Ube2L6: A Combined SAXS and NMR Study.

Kahraman K, Robson S, Gocenler O, Yenici C, Tozkoparan Ceylan C, Klein J ACS Omega. 2024; 9(38):39564-39572.

PMID: 39346869 PMC: 11425648. DOI: 10.1021/acsomega.4c03610.


Natural Product Graveoline Modulates Kirsten Rat Sarcoma Viral Oncogene Homologue (KRAS) Membrane Association: Insights from Advanced Spectroscopic Studies.

Cornilescu G, Bindu L, Sternicki L, Chao F, Gillette W, Fer N ACS Pharmacol Transl Sci. 2024; 7(7):1983-1995.

PMID: 39022364 PMC: 11249638. DOI: 10.1021/acsptsci.4c00075.