» Articles » PMID: 14507678

Onset of DNA Aggregation in Presence of Monovalent and Multivalent Counterions

Overview
Journal Biophys J
Publisher Cell Press
Specialty Biophysics
Date 2003 Sep 26
PMID 14507678
Citations 16
Authors
Affiliations
Soon will be listed here.
Abstract

We address theoretically aggregation of DNA segments by multivalent polyamines such as spermine and spermidine. In experiments, the aggregation occurs above a certain threshold concentration of multivalent ions. We demonstrate that the dependence of this threshold on the concentration of DNA has a simple form. When the DNA concentration c(DNA) is smaller than the monovalent salt concentration, the threshold multivalent ion concentration depends linearly on c(DNA), having the form alphac(DNA) + beta. The coefficients alpha and beta are related to the density profile of multivalent counterions around isolated DNA chains, at the onset of their aggregation. This analysis agrees extremely well with recent detailed measurements on DNA aggregation in the presence of spermine. From the fit to the experimental data, the number of condensed multivalent counterions per DNA chain can be deduced. A few other conclusions can then be reached: 1), the number of condensed spermine ions at the onset of aggregation decreases with the addition of monovalent salt; 2), the Poisson-Boltzmann theory overestimates the number of condensed multivalent ions at high monovalent salt concentrations; and 3), our analysis of the data indicates that the DNA charge is not overcompensated by spermine at the onset of aggregation.

Citing Articles

ISWI catalyzes nucleosome sliding in condensed nucleosome arrays.

Vizjak P, Kamp D, Hepp N, Scacchetti A, Gonzalez Pisfil M, Bartho J Nat Struct Mol Biol. 2024; 31(9):1331-1340.

PMID: 38664566 DOI: 10.1038/s41594-024-01290-x.


ISWI catalyzes nucleosome sliding in condensed nucleosome arrays.

Vizjak P, Kamp D, Hepp N, Scacchetti A, Gonzalez Pisfil M, Bartho J bioRxiv. 2023; .

PMID: 38106060 PMC: 10723341. DOI: 10.1101/2023.12.04.569516.


DNA-protamine condensates under low salt conditions: molecular dynamics simulation with a simple coarse-grained model focusing on electrostatic interactions.

Jang Y, Raspaud E, Lansac Y Nanoscale Adv. 2023; 5(18):4798-4808.

PMID: 37705794 PMC: 10496769. DOI: 10.1039/d2na00847e.


Multivalent ions and biomolecules: Attempting a comprehensive perspective.

Matsarskaia O, Roosen-Runge F, Schreiber F Chemphyschem. 2020; 21(16):1742-1767.

PMID: 32406605 PMC: 7496725. DOI: 10.1002/cphc.202000162.


Counterion-Dependent Mechanisms of DNA Origami Nanostructure Stabilization Revealed by Atomistic Molecular Simulation.

Roodhuizen J, Hendrikx P, Hilbers P, de Greef T, Markvoort A ACS Nano. 2019; 13(9):10798-10809.

PMID: 31502824 PMC: 6764110. DOI: 10.1021/acsnano.9b05650.


References
1.
Braunlin W, Strick T, Record Jr M . Equilibrium dialysis studies of polyamine binding to DNA. Biopolymers. 1982; 21(7):1301-14. DOI: 10.1002/bip.360210704. View

2.
Tang J, Ito T, Tao T, Traub P, Janmey P . Opposite effects of electrostatics and steric exclusion on bundle formation by F-actin and other filamentous polyelectrolytes. Biochemistry. 1997; 36(41):12600-7. DOI: 10.1021/bi9711386. View

3.
Pelta Jr J, Durand D, Doucet J, Livolant F . DNA mesophases induced by spermidine: structural properties and biological implications. Biophys J. 1996; 71(1):48-63. PMC: 1233456. DOI: 10.1016/S0006-3495(96)79232-9. View

4.
Rau D, Parsegian V . Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces. Biophys J. 1992; 61(1):246-59. PMC: 1260238. DOI: 10.1016/S0006-3495(92)81831-3. View

5.
Gosule L, SCHELLMAN J . DNA condensation with polyamines I. Spectroscopic studies. J Mol Biol. 1978; 121(3):311-26. DOI: 10.1016/0022-2836(78)90366-2. View