Dorantes-Torres C, Carrera-Reyna M, Santos W, Sanchez-Lopez R, Merino E
PLoS One. 2024; 19(1):e0297010.
PMID: 38277370
PMC: 10817156.
DOI: 10.1371/journal.pone.0297010.
Romero-Rivera A, Corbella M, Parracino A, Patrick W, Kamerlin S
JACS Au. 2022; 2(4):943-960.
PMID: 35557756
PMC: 9088769.
DOI: 10.1021/jacsau.2c00063.
Patel J, Oh J, Wang S, Crawford J, Isaacs F
Cell. 2022; 185(9):1487-1505.e14.
PMID: 35366417
PMC: 10619838.
DOI: 10.1016/j.cell.2022.03.008.
Lundin E, Nasvall J, Andersson D
Front Microbiol. 2020; 11:588235.
PMID: 33154742
PMC: 7591586.
DOI: 10.3389/fmicb.2020.588235.
Del Duca S, Chioccioli S, Vassallo A, Castronovo L, Fani R
Microorganisms. 2020; 8(5).
PMID: 32414216
PMC: 7284861.
DOI: 10.3390/microorganisms8050732.
How enzyme promiscuity and horizontal gene transfer contribute to metabolic innovation.
Glasner M, Truong D, Morse B
FEBS J. 2019; 287(7):1323-1342.
PMID: 31858709
PMC: 7245361.
DOI: 10.1111/febs.15185.
Evolutionary convergence in the biosyntheses of the imidazole moieties of histidine and purines.
Vazquez-Salazar A, Becerra A, Lazcano A
PLoS One. 2018; 13(4):e0196349.
PMID: 29698445
PMC: 5919458.
DOI: 10.1371/journal.pone.0196349.
Endoglucanase activity at a second site in triosephosphate isomerase-Promiscuity or compensation for a metabolic handicap?.
Sharma P, Guptasarma P
FEBS Open Bio. 2017; 7(8):1126-1143.
PMID: 28781953
PMC: 5537068.
DOI: 10.1002/2211-5463.12249.
Multifunctional enzymes from reduced genomes - model proteins for simple primordial metabolism?.
Seelig B
Mol Microbiol. 2017; 105(4):505-507.
PMID: 28665040
PMC: 5588889.
DOI: 10.1111/mmi.13742.
AGeNNT: annotation of enzyme families by means of refined neighborhood networks.
Kandlinger F, Plach M, Merkl R
BMC Bioinformatics. 2017; 18(1):274.
PMID: 28545394
PMC: 5445326.
DOI: 10.1186/s12859-017-1689-6.
Evolution of substrate specificity in a retained enzyme driven by gene loss.
Juarez-Vazquez A, Edirisinghe J, Verduzco-Castro E, Michalska K, Wu C, Noda-Garcia L
Elife. 2017; 6.
PMID: 28362260
PMC: 5404923.
DOI: 10.7554/eLife.22679.
TrpM, a Small Protein Modulating Tryptophan Biosynthesis and Morpho-Physiological Differentiation in Streptomyces coelicolor A3(2).
Palazzotto E, Gallo G, Renzone G, Giardina A, Sutera A, Silva J
PLoS One. 2016; 11(9):e0163422.
PMID: 27669158
PMC: 5036795.
DOI: 10.1371/journal.pone.0163422.
Co-occurrence of analogous enzymes determines evolution of a novel (βα)8-isomerase sub-family after non-conserved mutations in flexible loop.
Verduzco-Castro E, Michalska K, Endres M, Juarez-Vazquez A, Noda-Garcia L, Chang C
Biochem J. 2016; 473(9):1141-52.
PMID: 26929404
PMC: 6886522.
DOI: 10.1042/BJ20151271.
Long-Term Persistence of Bi-functionality Contributes to the Robustness of Microbial Life through Exaptation.
Plach M, Reisinger B, Sterner R, Merkl R
PLoS Genet. 2016; 12(1):e1005836.
PMID: 26824644
PMC: 4732765.
DOI: 10.1371/journal.pgen.1005836.
Two-step Ligand Binding in a (βα)8 Barrel Enzyme: SUBSTRATE-BOUND STRUCTURES SHED NEW LIGHT ON THE CATALYTIC CYCLE OF HisA.
Soderholm A, Guo X, Newton M, Evans G, Nasvall J, Patrick W
J Biol Chem. 2015; 290(41):24657-68.
PMID: 26294764
PMC: 4598979.
DOI: 10.1074/jbc.M115.678086.
Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.
Noda-Garcia L, Juarez-Vazquez A, Avila-Arcos M, Verduzco-Castro E, Montero-Moran G, Gaytan P
BMC Evol Biol. 2015; 15:107.
PMID: 26058375
PMC: 4462073.
DOI: 10.1186/s12862-015-0378-1.
The place of RNA in the origin and early evolution of the genetic machinery.
Wachtershauser G
Life (Basel). 2014; 4(4):1050-91.
PMID: 25532530
PMC: 4284482.
DOI: 10.3390/life4041050.
Promiscuous and adaptable enzymes fill "holes" in the tetrahydrofolate pathway in Chlamydia species.
Adams N, Thiaville J, Proestos J, Juarez-Vazquez A, McCoy A, Barona-Gomez F
mBio. 2014; 5(4):e01378-14.
PMID: 25006229
PMC: 4161248.
DOI: 10.1128/mBio.01378-14.
Evolution of tryptophan biosynthetic pathway in microbial genomes: a comparative genetic study.
Priya V, Sarkar S, Sinha S
Syst Synth Biol. 2014; 8(1):59-72.
PMID: 24592292
PMC: 3933628.
DOI: 10.1007/s11693-013-9127-1.
Enzyme evolution beyond gene duplication: A model for incorporating horizontal gene transfer.
Noda-Garcia L, Barona-Gomez F
Mob Genet Elements. 2013; 3(5):e26439.
PMID: 24251070
PMC: 3827091.
DOI: 10.4161/mge.26439.