Yukie Akune
Overview
Explore the profile of Yukie Akune including associated specialties, affiliations and a list of published articles.
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10
Citations
187
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Recent Articles
1.
Martinez K, Agirre J, Akune Y, Aoki-Kinoshita K, Arighi C, Axelsen K, et al.
Database (Oxford)
. 2024 Aug;
2024.
PMID: 39137905
Dynamic changes in protein glycosylation impact human health and disease progression. However, current resources that capture disease and phenotype information focus primarily on the macromolecules within the central dogma of...
2.
Akune Y, Arpinar S, Silva L, Palma A, Tajadura-Ortega V, Aoki-Kinoshita K, et al.
Glycobiology
. 2022 Mar;
32(7):552-555.
PMID: 35352122
Glycan microarrays are essential tools in glycobiology and are being widely used for assignment of glycan ligands in diverse glycan recognition systems. We have developed a new software, called Carbohydrate...
3.
Bonnardel F, Haslam S, Dell A, Feizi T, Liu Y, Tajadura-Ortega V, et al.
NPJ Biofilms Microbiomes
. 2021 Jun;
7(1):49.
PMID: 34131152
Bacteria use carbohydrate-binding proteins (CBPs), such as lectins and carbohydrate-binding modules (CBMs), to anchor to specific sugars on host surfaces. CBPs in the gut microbiome are well studied, but their...
4.
Hosoda M, Akune Y, Aoki-Kinoshita K
Bioinformatics
. 2017 Jan;
33(9):1317-1323.
PMID: 28093404
Motivation: A glycan consists of monosaccharides linked by glycosidic bonds, has branches and forms complex molecular structures. Databases have been developed to store large amounts of glycan-binding experiments, including glycan...
5.
Akune Y, Lin C, Abrahams J, Zhang J, Packer N, Aoki-Kinoshita K, et al.
Carbohydr Res
. 2016 Jun;
431:56-63.
PMID: 27318307
Glycan structures attached to proteins are comprised of diverse monosaccharide sequences and linkages that are produced from precursor nucleotide-sugars by a series of glycosyltransferases. Databases of these structures are an...
6.
Aoki-Kinoshita K, Kinjo A, Morita M, Igarashi Y, Chen Y, Shigemoto Y, et al.
J Biomed Semantics
. 2015 May;
6:3.
PMID: 25973165
Background: Linked Data has gained some attention recently in the life sciences as an effective way to provide and share data. As a part of the Semantic Web, data are...
7.
Campbell M, Ranzinger R, Lutteke T, Mariethoz J, Hayes C, Zhang J, et al.
BMC Bioinformatics
. 2014 Feb;
15 Suppl 1:S9.
PMID: 24564482
Background: Recent progress in method development for characterising the branched structures of complex carbohydrates has now enabled higher throughput technology. Automation of structure analysis then calls for software development since...
8.
Katayama T, Wilkinson M, Aoki-Kinoshita K, Kawashima S, Yamamoto Y, Yamaguchi A, et al.
J Biomed Semantics
. 2014 Feb;
5(1):5.
PMID: 24495517
The application of semantic technologies to the integration of biological data and the interoperability of bioinformatics analysis and visualization tools has been the common theme of a series of annual...
9.
Campbell M, Peterson R, Mariethoz J, Gasteiger E, Akune Y, Aoki-Kinoshita K, et al.
Nucleic Acids Res
. 2013 Nov;
42(Database issue):D215-21.
PMID: 24234447
The UniCarb KnowledgeBase (UniCarbKB; http://unicarbkb.org) offers public access to a growing, curated database of information on the glycan structures of glycoproteins. UniCarbKB is an international effort that aims to further...
10.
Akune Y, Hosoda M, Kaiya S, Shinmachi D, Aoki-Kinoshita K
OMICS
. 2010 Aug;
14(4):475-86.
PMID: 20726803
In the bioinformatics field, many computer algorithmic and data mining technologies have been developed for gene prediction, protein-protein interaction analysis, sequence analysis, and protein folding predictions, to name a few....