Wilfried Verachtert
Overview
Explore the profile of Wilfried Verachtert including associated specialties, affiliations and a list of published articles.
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Articles
5
Citations
26
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Recent Articles
1.
Herzeel C, DHondt E, Vandeweerd V, Botermans W, Akand M, Van der Aa F, et al.
PLOS Digit Health
. 2023 Nov;
2(11):e0000384.
PMID: 37992021
We present the Patient Trajectory Analysis Library (PTRA), a software package for explorative analysis of patient development. PTRA provides the tools for extracting statistically relevant trajectories from the medical event...
2.
Herzeel C, Costanza P, Decap D, Fostier J, Wuyts R, Verachtert W
PLoS One
. 2021 Feb;
16(2):e0244471.
PMID: 33539352
We present elPrep 5, which updates the elPrep framework for processing sequencing alignment/map files with variant calling. elPrep 5 can now execute the full pipeline described by the GATK Best...
3.
Costanza P, Herzeel C, Verachtert W
Evol Bioinform Online
. 2019 Aug;
15:1176934319869015.
PMID: 31452597
elPrep is an extensible multithreaded software framework for efficiently processing Sequence Alignment/Map (SAM)/Binary Alignment/Map (BAM) files in next-generation sequencing pipelines. Similar to other SAM/BAM tools, a key challenge in elPrep...
4.
Costanza P, Herzeel C, Verachtert W
BMC Bioinformatics
. 2019 Jun;
20(1):301.
PMID: 31159721
Background: elPrep is an established multi-threaded framework for preparing SAM and BAM files in sequencing pipelines. To achieve good performance, its software architecture makes only a single pass through a...
5.
Herzeel C, Costanza P, Decap D, Fostier J, Verachtert W
PLoS One
. 2019 Feb;
14(2):e0209523.
PMID: 30759172
We present elPrep 4, a reimplementation from scratch of the elPrep framework for processing sequence alignment map files in the Go programming language. elPrep 4 includes multiple new features allowing...