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Vipin K Menon

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Articles 16
Citations 145
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Recent Articles
1.
Behera S, Belyeu J, Chen X, Paulin L, Nguyen N, Newman E, et al.
BMC Med Genomics . 2024 Oct; 17(1):255. PMID: 39449055
The abundance of Lp(a) protein holds significant implications for the risk of cardiovascular disease (CVD), which is directly impacted by the copy number (CN) of KIV-2, a 5.5 kbp sub-region....
2.
Bhamidipati S, Surathu A, Chao H, Agustinho D, Xiang Q, Kottapalli K, et al.
bioRxiv . 2024 Sep; PMID: 39345650
Respiratory syncytial virus (RSV) is the leading cause of lower respiratory tract infections in children worldwide, while human noroviruses (HuNoV) are a leading cause of epidemic and sporadic acute gastroenteritis....
3.
Henke D, Piedra F, Avadhanula V, Doddapaneni H, Muzny D, Menon V, et al.
bioRxiv . 2024 Sep; PMID: 39282457
Every viral infection entails an evolving population of viral genomes. High-throughput sequencing technologies can be used to characterize such populations, but to date there are few published examples of such...
4.
Ramani S, Javornik Cregeen S, Surathu A, Neill F, Muzny D, Doddapaneni H, et al.
bioRxiv . 2024 Sep; PMID: 39282326
Background: Human noroviruses are a leading cause of acute and sporadic gastroenteritis worldwide. The evolution of human noroviruses in immunocompromised persons has been evaluated in many studies. Much less is...
5.
Agustinho D, Fu Y, Menon V, Metcalf G, Treangen T, Sedlazeck F
Nat Methods . 2024 Apr; 21(6):954-966. PMID: 38689099
Long-read sequencing has recently transformed metagenomics, enhancing strain-level pathogen characterization, enabling accurate and complete metagenome-assembled genomes, and improving microbiome taxonomic classification and profiling. These advancements are not only due to...
6.
Chappell C, Hoffman K, Lorenzi P, Tan L, Petrosino J, Gibbs R, et al.
bioRxiv . 2024 Jan; PMID: 38187744
Gut microbiota produce tryptophan metabolites (TMs) important to homeostasis. However, measuring TM levels in stool and determining their microbial sources can be difficult. Here, we measured TMs from the indole...
7.
Carter H, Clark J, Carlin L, Vaughan E, Rajan A, Olvera A, et al.
bioRxiv . 2023 Jul; PMID: 37398483
We describe the epidemiology and clinical characteristics of 29 patients with cancer and diarrhea in whom Enteroaggregative (EAEC) was initially identified by GI BioFire panel multiplex. strains were successfully isolated...
8.
Holmstrom L, Chaudhary N, Nakamura K, Chugh H, Uy-Evanado A, Norby F, et al.
Circ Genom Precis Med . 2023 May; 16(4):404-405. PMID: 37194601
No abstract available.
9.
Jun G, English A, Metcalf G, Yang J, Chaisson M, Pankratz N, et al.
Res Sq . 2023 Feb; PMID: 36778386
Ever larger Structural Variant (SV) catalogs highlighting the diversity within and between populations help researchers better understand the links between SVs and disease. The identification of SVs from DNA sequence...
10.
Jun G, English A, Metcalf G, Yang J, Chaisson M, Pankratz N, et al.
bioRxiv . 2023 Feb; PMID: 36747810
Ever larger Structural Variant (SV) catalogs highlighting the diversity within and between populations help researchers better understand the links between SVs and disease. The identification of SVs from DNA sequence...