Tobias Czauderna
Overview
Explore the profile of Tobias Czauderna including associated specialties, affiliations and a list of published articles.
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Articles
33
Citations
691
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Recent Articles
1.
Grone N, Gruneisen B, Klein K, de Bono B, Czauderna T, Schreiber F
J Integr Bioinform
. 2024 Jul;
21(3).
PMID: 38996084
We present a method for the layout of anatomical structures and blood vessels based on information from the Foundational Model of Anatomy (FMA). Our approach integrates a novel vascular layout...
2.
Niarakis A, Ostaszewski M, Mazein A, Kuperstein I, Kutmon M, Gillespie M, et al.
Front Immunol
. 2024 Feb;
14:1282859.
PMID: 38414974
Introduction: The COVID-19 Disease Map project is a large-scale community effort uniting 277 scientists from 130 Institutions around the globe. We use high-quality, mechanistic content describing SARS-CoV-2-host interactions and develop...
3.
Aichem M, Klein K, Czauderna T, Garkov D, Zhao J, Li J, et al.
J Integr Bioinform
. 2022 Oct;
19(4).
PMID: 36215728
Biomolecular networks, including genome-scale metabolic models (GSMMs), assemble the knowledge regarding the biological processes that happen inside specific organisms in a way that allows for analysis, simulation, and exploration. With...
4.
Schreiber F, Czauderna T
J Integr Bioinform
. 2022 Jul;
19(2).
PMID: 35786424
Visual representations are commonly used to explore, analyse, and communicate information and knowledge in systems biology and beyond. Such visualisations not only need to be accurate but should also be...
5.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Dec;
17(12):e10851.
PMID: 34939300
No abstract available.
6.
Ostaszewski M, Niarakis A, Mazein A, Kuperstein I, Phair R, Orta-Resendiz A, et al.
Mol Syst Biol
. 2021 Oct;
17(10):e10387.
PMID: 34664389
We need to effectively combine the knowledge from surging literature with complex datasets to propose mechanistic models of SARS-CoV-2 infection, improving data interpretation and predicting key targets of intervention. Here,...
7.
Aichem M, Czauderna T, Zhu Y, Zhao J, Klapperstuck M, Klein K, et al.
Bioinformatics
. 2021 May;
37(23):4460-4468.
PMID: 33970212
Motivation: Large metabolic models, including genome-scale metabolic models, are nowadays common in systems biology, biotechnology and pharmacology. They typically contain thousands of metabolites and reactions and therefore methods for their...
8.
Sawada S, Itoh T, Misaka T, Obayashi S, Czauderna T, Stephens K
Vis Comput Ind Biomed Art
. 2020 Aug;
3(1):20.
PMID: 32851564
Fluid dynamics simulation is often repeated under varying conditions. This leads to a generation of large amounts of results, which are difficult to compare. To compare results under different conditions,...
9.
Schreiber F, Sommer B, Czauderna T, Golebiewski M, Gorochowski T, Hucka M, et al.
J Integr Bioinform
. 2020 Jun;
17(2-3).
PMID: 32598316
This special issue of the Journal of Integrative Bioinformatics presents papers related to the 10th COMBINE meeting together with the annual update of COMBINE standards in systems and synthetic biology.
10.
Bergmann F, Czauderna T, Dogrusoz U, Rougny A, Drager A, Toure V, et al.
J Integr Bioinform
. 2020 Jun;
17(2-3).
PMID: 32568733
This document defines Version 0.3 Markup Language (ML) support for the Systems Biology Graphical Notation (SBGN), a set of three complementary visual languages developed for biochemists, modelers, and computer scientists....