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Sune Pletscher-Frankild

Explore the profile of Sune Pletscher-Frankild including associated specialties, affiliations and a list of published articles. Areas
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Articles 8
Citations 1138
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Recent Articles
1.
Hansson L, Hansen R, Pletscher-Frankild S, Berzins R, Hansen D, Madsen D, et al.
PLoS One . 2020 Jun; 15(6):e0233956. PMID: 32542027
Background: Surveying the scientific literature is an important part of early drug discovery; and with the ever-increasing amount of biomedical publications it is imperative to focus on the most interesting...
2.
Pletscher-Frankild S, Jensen L
J Cheminform . 2019 Mar; 11(1):19. PMID: 30850898
Most BioCreative tasks to date have focused on assessing the quality of text-mining annotations in terms of precision and recall. Interoperability, speed, and stability are, however, other important factors to...
3.
Santos A, Tsafou K, Stolte C, Pletscher-Frankild S, ODonoghue S, Jensen L
PeerJ . 2015 Jul; 3:e1054. PMID: 26157623
For tissues to carry out their functions, they rely on the right proteins to be present. Several high-throughput technologies have been used to map out which proteins are expressed in...
4.
Bassani-Sternberg M, Pletscher-Frankild S, Jensen L, Mann M
Mol Cell Proteomics . 2015 Jan; 14(3):658-73. PMID: 25576301
HLA class I molecules reflect the health state of cells to cytotoxic T cells by presenting a repertoire of endogenously derived peptides. However, the extent to which the proteome shapes...
5.
Pletscher-Frankild S, Palleja A, Tsafou K, Binder J, Jensen L
Methods . 2014 Dec; 74:83-9. PMID: 25484339
Text mining is a flexible technology that can be applied to numerous different tasks in biology and medicine. We present a system for extracting disease-gene associations from biomedical abstracts. The...
6.
Binder J, Pletscher-Frankild S, Tsafou K, Stolte C, ODonoghue S, Schneider R, et al.
Database (Oxford) . 2014 Feb; 2014:bau012. PMID: 24573882
Information on protein subcellular localization is important to understand the cellular functions of proteins. Currently, such information is manually curated from the literature, obtained from high-throughput microscopy-based screens and predicted...
7.
Kuhn M, Szklarczyk D, Pletscher-Frankild S, Blicher T, von Mering C, Jensen L, et al.
Nucleic Acids Res . 2013 Dec; 42(Database issue):D401-7. PMID: 24293645
STITCH is a database of protein-chemical interactions that integrates many sources of experimental and manually curated evidence with text-mining information and interaction predictions. Available at http://stitch.embl.de, the resulting interaction network...
8.
Mork S, Pletscher-Frankild S, Palleja Caro A, Gorodkin J, Jensen L
Bioinformatics . 2013 Nov; 30(3):392-7. PMID: 24273243
Motivation: MicroRNAs (miRNAs) are a highly abundant class of non-coding RNA genes involved in cellular regulation and thus also diseases. Despite miRNAs being important disease factors, miRNA-disease associations remain low...