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Simeon Borko

Explore the profile of Simeon Borko including associated specialties, affiliations and a list of published articles. Areas
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Articles 6
Citations 26
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Recent Articles
1.
Khan R, Pokorna P, Stourac J, Borko S, Dobias A, Planas-Iglesias J, et al.
Comput Struct Biotechnol J . 2024 Dec; 24:734-738. PMID: 39687752
Next-generation sequencing technology has created many new opportunities for clinical diagnostics, but it faces the challenge of functional annotation of identified mutations. Various algorithms have been developed to predict the...
2.
Khan R, Pokorna P, Stourac J, Borko S, Arefiev I, Planas-Iglesias J, et al.
J Cheminform . 2024 Jul; 16(1):86. PMID: 39075588
Every year, more than 19 million cancer cases are diagnosed, and this number continues to increase annually. Since standard treatment options have varying success rates for different types of cancer,...
3.
Planas-Iglesias J, Borko S, Swiatkowski J, Elias M, Havlasek M, Salamon O, et al.
Nucleic Acids Res . 2024 May; 52(W1):W159-W169. PMID: 38801076
Recombinant proteins play pivotal roles in numerous applications including industrial biocatalysts or therapeutics. Despite the recent progress in computational protein structure prediction, protein solubility and reduced aggregation propensity remain challenging...
4.
Stourac J, Borko S, Khan R, Pokorna P, Dobias A, Planas-Iglesias J, et al.
Brief Bioinform . 2023 Dec; 25(1). PMID: 38066711
PredictONCO 1.0 is a unique web server that analyzes effects of mutations on proteins frequently altered in various cancer types. The server can assess the impact of mutations on the...
5.
Musil M, Jezik A, Horackova J, Borko S, Kabourek P, Damborsky J, et al.
Brief Bioinform . 2023 Nov; 25(1). PMID: 38018911
Thermostable proteins find their use in numerous biomedical and biotechnological applications. However, the computational design of stable proteins often results in single-point mutations with a limited effect on protein stability....
6.
Hon J, Borko S, Stourac J, Prokop Z, Zendulka J, Bednar D, et al.
Nucleic Acids Res . 2020 May; 48(W1):W104-W109. PMID: 32392342
Millions of protein sequences are being discovered at an incredible pace, representing an inexhaustible source of biocatalysts. Despite genomic databases growing exponentially, classical biochemical characterization techniques are time-demanding, cost-ineffective and...