Shili Lin
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Explore the profile of Shili Lin including associated specialties, affiliations and a list of published articles.
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Articles
136
Citations
1401
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Recent Articles
1.
Zhou Y, Li T, Choppavarapu L, Fang K, Lin S, Jin V
Nat Commun
. 2024 Sep;
15(1):8310.
PMID: 39333113
An integration of 3D chromatin structure and gene expression at single-cell resolution has yet been demonstrated. Here, we develop a computational method, a multiomic data integration (MUDI) algorithm, which integrates...
2.
Liu Z, Turkmen A, Lin S
Stat Appl Genet Mol Biol
. 2024 Jan;
23(1).
PMID: 38235525
Population stratification (PS) is one major source of confounding in both single nucleotide polymorphism (SNP) and haplotype association studies. To address PS, principal component regression (PCR) and linear mixed model...
3.
Lou S, Lin S
PLoS One
. 2024 Jan;
19(1):e0287521.
PMID: 38232107
The ability to simulate high-throughput data with high fidelity to real experimental data is fundamental for benchmarking methods used to detect true long-range chromatin interactions mediated by a specific protein....
4.
Zhang B, Lin S, Moraes L, Firkins J, Hristov A, Kebreab E, et al.
Sci Rep
. 2023 Dec;
13(1):21305.
PMID: 38042941
Methane (CH) emissions from ruminants are of a significant environmental concern, necessitating accurate prediction for emission inventories. Existing models rely solely on dietary and host animal-related data, ignoring the predicting...
5.
Population stratification correction using Bayesian shrinkage priors for genetic association studies
Liu Z, Turkmen A, Lin S
Ann Hum Genet
. 2023 Sep;
87(6):302-315.
PMID: 37771252
Introduction: Population stratification (PS) is a major source of confounding in population-based genetic association studies of quantitative traits. Principal component regression (PCR) and linear mixed model (LMM) are two commonly...
6.
Fauvel C, White R, Vanderpool R, Badagliacca R, Tobore T, Rahman M, et al.
Chest
. 2023 Sep;
165(2):431-436.
PMID: 37709252
No abstract available.
7.
Fauvel C, Liu Y, Correa-Jaque P, Kanwar M, Vizza C, Lin S, et al.
Chest
. 2023 Jun;
164(6):1518-1530.
PMID: 37356711
Background: Based on results of the Ambrisentan and Tadalafil in Patients with Pulmonary Arterial Hypertension (AMBITION) trial, upfront combination therapy is recommended for treatment-naive patients with low-risk pulmonary arterial hypertension...
8.
Sadee W, Cheeseman I, Papp A, Pietrzak M, Seweryn M, Zhou X, et al.
Res Sq
. 2023 Jun;
PMID: 37333188
Background: (, the causative bacterium of tuberculosis (TB), establishes residence and grows in human alveolar macrophages (AMs). Inter-individual variation in -human AM interactions can indicate TB risk and the efficacy...
9.
Deng Q, Song C, Lin S
Eur J Hum Genet
. 2023 May;
32(6):681-690.
PMID: 37237036
Genome-wide association studies (GWAS) have identified thousands of genetic variants associated with human traits or diseases in the past decade. Nevertheless, much of the heritability of many traits is still...
10.
Khalili A, Shokoohi F, Asgharian M, Lin S
Biometrics
. 2023 Apr;
79(4):3445-3457.
PMID: 37066855
Finite mixture of regressions (FMR) are commonly used to model heterogeneous effects of covariates on a response variable in settings where there are unknown underlying subpopulations. FMRs, however, cannot accommodate...