Ruth Grene
Overview
Explore the profile of Ruth Grene including associated specialties, affiliations and a list of published articles.
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Articles
33
Citations
852
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Recent Articles
1.
Mane S, Robinet C, Ulanov A, Schafleitner R, Tincopa L, Gaudin A, et al.
Funct Plant Biol
. 2020 Jul;
35(8):669-688.
PMID: 32688822
Responses to prolonged drought and recovery from drought of two South American potato (Solanum tuberosum L. ssp. andigena (Juz & Buk) Hawkes) landraces, Sullu and Ccompis were compared under field...
2.
Song Q, Lee J, Akter S, Rogers M, Grene R, Li S
Nucleic Acids Res
. 2020 Apr;
48(11):e62.
PMID: 32329779
Recent advances in genomic technologies have generated data on large-scale protein-DNA interactions and open chromatin regions for many eukaryotic species. How to identify condition-specific functions of transcription factors using these...
3.
Lee J, Heath L, Grene R, Li S
Plant Methods
. 2019 Jun;
15:61.
PMID: 31164912
Background: Comparative transcriptome analysis is the comparison of expression patterns between homologous genes in different species. Since most molecular mechanistic studies in plants have been performed in model species, including...
4.
Grene R, Provart N, Pardo J
Front Plant Sci
. 2019 Apr;
10:373.
PMID: 31001299
No abstract available.
5.
Dong S, Lau V, Song R, Ierullo M, Esteban E, Wu Y, et al.
Plant Physiol
. 2019 Jan;
179(4):1893-1907.
PMID: 30679268
Determining the complete Arabidopsis () protein-protein interaction network is essential for understanding the functional organization of the proteome. Numerous small-scale studies and a couple of large-scale ones have elucidated a...
6.
Song Q, Grene R, Heath L, Li S
BMC Syst Biol
. 2017 Dec;
11(1):140.
PMID: 29246163
Background: In gene regulatory networks, transcription factors often function as co-regulators to synergistically induce or inhibit expression of their target genes. However, most existing module-finding algorithms can only identify densely...
7.
Haak D, Fukao T, Grene R, Hua Z, Ivanov R, Perrella G, et al.
Front Plant Sci
. 2017 Oct;
8:1564.
PMID: 29033955
The sessile lifestyle of plants requires them to cope with stresses . Plants overcome abiotic stresses by altering structure/morphology, and in some extreme conditions, by compressing the life cycle to...
8.
Elmarakeby H, Arefiyan M, Myers E, Li S, Grene R, Heath L
J Comput Biol
. 2017 Aug;
24(12):1226-1229.
PMID: 28846457
The Beacon Editor is a cross-platform desktop application for the creation and modification of signal transduction pathways using the Systems Biology Graphical Notation Activity Flow (SBGN-AF) language. Prompted by biologists'...
9.
Aghamirzaie D, Velmurugan K, Wu S, Altarawy D, Heath L, Grene R
F1000Res
. 2017 May;
6:372.
PMID: 28529706
The increasing availability of chromatin immunoprecipitation sequencing (ChIP-Seq) data enables us to learn more about the action of transcription factors in the regulation of gene expression. Even though transcriptional regulation...
10.
Ni Y, Aghamirzaie D, Elmarakeby H, Collakova E, Li S, Grene R, et al.
Front Plant Sci
. 2017 Jan;
7:1936.
PMID: 28066488
Gene regulatory networks (GRNs) provide a representation of relationships between regulators and their target genes. Several methods for GRN inference, both unsupervised and supervised, have been developed to date. Because...