Rahuman S Malik-Sheriff
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Explore the profile of Rahuman S Malik-Sheriff including associated specialties, affiliations and a list of published articles.
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447
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Recent Articles
1.
Smith L, Malik-Sheriff R, Nguyen T, Hermjakob H, Karr J, Shaikh B, et al.
bioRxiv
. 2025 Feb;
PMID: 39896466
The BioModels Repository contains over 1000 manually curated mechanistic models drawn from published literature, most of which are encoded in the Systems Biology Markup Language (SBML). This community-based standard formally...
2.
Silberberg M, Hermjakob H, Malik-Sheriff R, Grecco H
Bioinformatics
. 2024 Jul;
40(8).
PMID: 39078116
Motivation: Chemical reaction networks (CRNs) play a pivotal role in diverse fields such as systems biology, biochemistry, chemical engineering, and epidemiology. High-level definitions of CRNs enables to use various simulation...
3.
Karr J, Malik-Sheriff R, Osborne J, Gonzalez-Parra G, Forgoston E, Bowness R, et al.
Front Syst Biol
. 2023 Mar;
2.
PMID: 36909847
During the COVID-19 pandemic, mathematical modeling of disease transmission has become a cornerstone of key state decisions. To advance the state-of-the-art host viral modeling to handle future pandemics, many scientists...
4.
Fuzi B, Malik-Sheriff R, Manners E, Hermjakob H, Ecker G
J Cheminform
. 2022 Jun;
14(1):37.
PMID: 35692045
As an alternative to one drug-one target approaches, systems biology methods can provide a deeper insight into the holistic effects of drugs. Network-based approaches are tools of systems biology, that...
5.
Cantelli G, Bateman A, Brooksbank C, Petrov A, Malik-Sheriff R, Ide-Smith M, et al.
Nucleic Acids Res
. 2021 Dec;
50(D1):D11-D19.
PMID: 34850134
The European Bioinformatics Institute (EMBL-EBI) maintains a comprehensive range of freely available and up-to-date molecular data resources, which includes over 40 resources covering every major data type in the life...
6.
Tiwari K, Kananathan S, Roberts M, Meyer J, Sharif Shohan M, Xavier A, et al.
Mol Syst Biol
. 2021 Feb;
17(2):e9982.
PMID: 33620773
Reproducibility of scientific results is a key element of science and credibility. The lack of reproducibility across many scientific fields has emerged as an important concern. In this piece, we...
7.
Keating S, Waltemath D, Konig M, Zhang F, Drager A, Chaouiya C, et al.
Mol Syst Biol
. 2020 Aug;
16(8):e9110.
PMID: 32845085
Systems biology has experienced dramatic growth in the number, size, and complexity of computational models. To reproduce simulation results and reuse models, researchers must exchange unambiguous model descriptions. We review...
8.
Waltemath D, Golebiewski M, Blinov M, Gleeson P, Hermjakob H, Hucka M, et al.
J Integr Bioinform
. 2020 Jun;
17(2-3).
PMID: 32598315
This paper presents a report on outcomes of the 10th Computational Modeling in Biology Network (COMBINE) meeting that was held in Heidelberg, Germany, in July of 2019. The annual event...
9.
Glont M, Arankalle C, Tiwari K, Nguyen T, Hermjakob H, Malik-Sheriff R
Bioinformatics
. 2020 Jun;
36(17):4649-4654.
PMID: 32573648
Motivation: One of the major bottlenecks in building systems biology models is identification and estimation of model parameters for model calibration. Searching for model parameters from published literature and models...
10.
Malik-Sheriff R, Glont M, Nguyen T, Tiwari K, Roberts M, Xavier A, et al.
Nucleic Acids Res
. 2019 Nov;
48(D1):D407-D415.
PMID: 31701150
Computational modelling has become increasingly common in life science research. To provide a platform to support universal sharing, easy accessibility and model reproducibility, BioModels (https://www.ebi.ac.uk/biomodels/), a repository for mathematical models,...