Peter Kerpedjiev
Overview
Explore the profile of Peter Kerpedjiev including associated specialties, affiliations and a list of published articles.
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Articles
17
Citations
2714
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Recent Articles
1.
Tanasie A, Kerpedjiev P, Hammer S, Badelt S
Bioinformatics
. 2023 Sep;
39(9).
PMID: 37682108
Motivation: Understanding RNA folding at the level of secondary structures can give important insights concerning the function of a molecule. We are interested to learn how secondary structures change dynamically...
2.
Reiff S, Schroeder A, Kirli K, Cosolo A, Bakker C, Mercado L, et al.
Nat Commun
. 2022 Nov;
13(1):6561.
PMID: 36323678
No abstract available.
3.
Nair S, Barrett A, Li D, Raney B, Lee B, Kerpedjiev P, et al.
Nat Genet
. 2022 Oct;
54(11):1581-1583.
PMID: 36241719
No abstract available.
4.
Reiff S, Schroeder A, Kirli K, Cosolo A, Bakker C, Mercado L, et al.
Nat Commun
. 2022 May;
13(1):2365.
PMID: 35501320
The 4D Nucleome (4DN) Network aims to elucidate the complex structure and organization of chromosomes in the nucleus and the impact of their disruption in disease biology. We present the...
5.
Nurk S, Koren S, Rhie A, Rautiainen M, Bzikadze A, Mikheenko A, et al.
Science
. 2022 Mar;
376(6588):44-53.
PMID: 35357919
Since its initial release in 2000, the human reference genome has covered only the euchromatic fraction of the genome, leaving important heterochromatic regions unfinished. Addressing the remaining 8% of the...
6.
Altemose N, Logsdon G, Bzikadze A, Sidhwani P, Langley S, Caldas G, et al.
Science
. 2022 Mar;
376(6588):eabl4178.
PMID: 35357911
Existing human genome assemblies have almost entirely excluded repetitive sequences within and near centromeres, limiting our understanding of their organization, evolution, and functions, which include facilitating proper chromosome segregation. Now,...
7.
Vollger M, Kerpedjiev P, Phillippy A, Eichler E
Bioinformatics
. 2022 Jan;
38(7):2049-2051.
PMID: 35020798
Summary: The visualization and analysis of genomic repeats is typically accomplished using dot plots; however, the emergence of telomere-to-telomere assemblies with multi-megabase repeats requires new visualization strategies. Here, we introduce...
8.
Wang S, Lee S, Chu C, Jain D, Kerpedjiev P, Nelson G, et al.
Genome Biol
. 2020 Apr;
21(1):73.
PMID: 32293513
The three-dimensional conformation of a genome can be profiled using Hi-C, a technique that combines chromatin conformation capture with high-throughput sequencing. However, structural variations often yield features that can be...
9.
Lekschas F, Behrisch M, Bach B, Kerpedjiev P, Gehlenborg N, Pfister H
IEEE Trans Vis Comput Graph
. 2019 Aug;
26(1):611-621.
PMID: 31442989
We present Scalable Insets, a technique for interactively exploring and navigating large numbers of annotated patterns in multiscale visualizations such as gigapixel images, matrices, or maps. Exploration of many but...
10.
Thiel B, Beckmann I, Kerpedjiev P, Hofacker I
F1000Res
. 2019 May;
8.
PMID: 31069053
We present , a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges...