Olivier Sallou
Overview
Explore the profile of Olivier Sallou including associated specialties, affiliations and a list of published articles.
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Articles
13
Citations
650
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Recent Articles
1.
Szachnowski U, Becker E, Stuparevic I, Wery M, Sallou O, Boudet M, et al.
RNA
. 2025 Jan;
PMID: 39848697
Previous RNA profiling studies revealed co-expression of overlapping sense/antisense (s/a) transcripts in pro- and eukaryotic organisms. Functional analyses in yeast have shown that certain s/a mRNA/mRNA and mRNA/lncRNA pairs form...
2.
Bai J, Bandla C, Guo J, Vera Alvarez R, Bai M, Vizcaino J, et al.
J Proteome Res
. 2021 Feb;
20(4):2056-2061.
PMID: 33625229
BioContainers is an open-source project that aims to create, store, and distribute bioinformatics software containers and packages. The BioContainers community has developed a set of guidelines to standardize software containers...
3.
Gruening B, Sallou O, Moreno P, Veiga Leprevost F, Menager H, Sondergaard D, et al.
F1000Res
. 2019 Sep;
7.
PMID: 31543945
Software Containers are changing the way scientists and researchers develop, deploy and exchange scientific software. They allow labs of all sizes to easily install bioinformatics software, maintain multiple versions of...
4.
Darde T, Gaudriault P, Beranger R, Lancien C, Caillarec-Joly A, Sallou O, et al.
Bioinformatics
. 2018 Feb;
34(12):2116-2122.
PMID: 29385404
Motivation: At the same time that toxicologists express increasing concern about reproducibility in this field, the development of dedicated databases has already smoothed the path toward improving the storage and...
5.
Sallou O, Duek P, Darde T, Collin O, Lane L, Chalmel F
Database (Oxford)
. 2016 May;
2016.
PMID: 27173522
Among the 20 000 human gene products predicted from genome annotation, about 3000 still lack validation at protein level. We developed PepPSy, a user-friendly gene expression-based prioritization system, to help...
6.
Moreews F, Sallou O, Menager H, Le Bras Y, Monjeaud C, Blanchet C, et al.
F1000Res
. 2016 Feb;
4:1443.
PMID: 26913191
Linux container technologies, as represented by Docker, provide an alternative to complex and time-consuming installation processes needed for scientific software. The ease of deployment and the process isolation they enable,...
7.
Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, et al.
Nucleic Acids Res
. 2015 Apr;
43(W1):W589-98.
PMID: 25897122
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported...
8.
Darde T, Sallou O, Becker E, Evrard B, Monjeaud C, Le Bras Y, et al.
Nucleic Acids Res
. 2015 Apr;
43(W1):W109-16.
PMID: 25883147
We report the development of the ReproGenomics Viewer (RGV), a multi- and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive science...
9.
Sassi M, Augagneur Y, Mauro T, Ivain L, Chabelskaya S, Hallier M, et al.
RNA
. 2015 Mar;
21(5):1005-17.
PMID: 25805861
An overflow of regulatory RNAs (sRNAs) was identified in a wide range of bacteria. We designed and implemented a new resource for the hundreds of sRNAs identified in Staphylococci, with...
10.
Moller S, Afgan E, Banck M, Bonnal R, Booth T, Chilton J, et al.
BMC Bioinformatics
. 2014 Dec;
15 Suppl 14:S7.
PMID: 25472764
Background: Computational biology comprises a wide range of technologies and approaches. Multiple technologies can be combined to create more powerful workflows if the individuals contributing the data or providing tools...