Olivier Dameron
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Explore the profile of Olivier Dameron including associated specialties, affiliations and a list of published articles.
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37
Citations
220
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Recent Articles
1.
Tirlet Y, Boudet M, Becker E, Legeai F, Dameron O
Comput Struct Biotechnol J
. 2024 Dec;
23:4232-4241.
PMID: 39660218
The expansion of multi-omics datasets raises significant challenges for data integration and querying. To overcome these challenges, we developed a generic RDF-based integration schema that connects various types of differential...
2.
Beust C, Becker E, Theret N, Dameron O
Comput Struct Biotechnol J
. 2024 Nov;
23:3999-4010.
PMID: 39582893
In systems biology, the study of biological pathways plays a central role in understanding the complexity of biological systems. The massification of pathway data made available by numerous online databases...
3.
Louarn M, Collet G, Barre E, Fest T, Dameron O, Siegel A, et al.
PLoS Comput Biol
. 2024 Jan;
20(1):e1011816.
PMID: 38252636
Motivation: Transcriptional regulation is performed by transcription factors (TF) binding to DNA in context-dependent regulatory regions and determines the activation or inhibition of gene expression. Current methods of transcriptional regulatory...
4.
Juigne C, Dameron O, Moreews F, Gondret F, Becker E
Bioinformatics
. 2023 Apr;
39(5).
PMID: 37097895
Motivation: Molecular complexes play a major role in the regulation of biological pathways. The Biological Pathway Exchange format (BioPAX) facilitates the integration of data sources describing interactions some of which...
5.
Louarn M, Chatonnet F, Garnier X, Fest T, Siegel A, Faron C, et al.
J Biomed Semantics
. 2022 Mar;
13(1):11.
PMID: 35346379
Background: In life sciences, there has been a long-standing effort of standardization and integration of reference datasets and databases. Despite these efforts, many studies data are provided using specific and...
6.
Melkonian M, Juigne C, Dameron O, Rabut G, Becker E
Bioinformatics
. 2022 Jan;
38(6):1685-1691.
PMID: 35015827
Motivation: Information on protein-protein interactions is collected in numerous primary databases with their own curation process. Several meta-databases aggregate primary databases to provide more exhaustive datasets. In addition to exhaustivity,...
7.
Henry V, Moszer I, Dameron O, Vila Xicota L, Dubois B, Potier M, et al.
Database (Oxford)
. 2021 Feb;
2021.
PMID: 33590873
Omics technologies offer great promises for improving our understanding of diseases. The integration and interpretation of such data pose major challenges, calling for adequate knowledge models. Disease maps provide curated...
8.
Azar F, Courtet K, Dekky B, Bonnier D, Dameron O, Colige A, et al.
Liver Int
. 2020 Apr;
40(8):2021-2033.
PMID: 32306499
Background & Aims: Activation of hepatic stellate cells (HSC) is a critical process involved in liver fibrosis. Several miRNAs are implicated in gene regulation during this process but their exact...
9.
Wery M, Dameron O, Nicolas J, Remy E, Siegel A
J Theor Biol
. 2019 Feb;
467:66-79.
PMID: 30738049
In order to predict the behavior of a biological system, one common approach is to perform a simulation on a dynamic model. Boolean networks allow to analyze the qualitative aspects...
10.
Aite M, Chevallier M, Frioux C, Trottier C, Got J, Cortes M, et al.
PLoS Comput Biol
. 2018 May;
14(5):e1006146.
PMID: 29791443
Genome-scale metabolic models have become the tool of choice for the global analysis of microorganism metabolism, and their reconstruction has attained high standards of quality and reliability. Improvements in this...