Nishadi De Silva
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Explore the profile of Nishadi De Silva including associated specialties, affiliations and a list of published articles.
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10
Citations
3024
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Recent Articles
1.
Urban M, Cuzick A, Seager J, Wood V, Rutherford K, Venkatesh S, et al.
Nucleic Acids Res
. 2021 Nov;
50(D1):D837-D847.
PMID: 34788826
Since 2005, the Pathogen-Host Interactions Database (PHI-base) has manually curated experimentally verified pathogenicity, virulence and effector genes from fungal, bacterial and protist pathogens, which infect animal, plant, fish, insect and/or...
2.
Howe K, Achuthan P, Allen J, Allen J, Alvarez-Jarreta J, Amode M, et al.
Nucleic Acids Res
. 2020 Nov;
49(D1):D884-D891.
PMID: 33137190
The Ensembl project (https://www.ensembl.org) annotates genomes and disseminates genomic data for vertebrate species. We create detailed and comprehensive annotation of gene structures, regulatory elements and variants, and enable comparative genomics...
3.
Urban M, Cuzick A, Seager J, Wood V, Rutherford K, Venkatesh S, et al.
Nucleic Acids Res
. 2019 Nov;
48(D1):D613-D620.
PMID: 31733065
The pathogen-host interactions database (PHI-base) is available at www.phi-base.org. PHI-base contains expertly curated molecular and biological information on genes proven to affect the outcome of pathogen-host interactions reported in peer...
4.
Howe K, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D689-D695.
PMID: 31598706
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the...
5.
Kersey P, Allen J, Allot A, Barba M, Boddu S, Bolt B, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D802-D808.
PMID: 29092050
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the Ensembl project (http://www.ensembl.org). Together, the two resources provide...
6.
Page A, De Silva N, Hunt M, Quail M, Parkhill J, Harris S, et al.
Microb Genom
. 2017 Mar;
2(8):e000083.
PMID: 28348874
The rapidly reducing cost of bacterial genome sequencing has lead to its routine use in large-scale microbial analysis. Though mapping approaches can be used to find differences relative to the...
7.
Hunt M, De Silva N, Otto T, Parkhill J, Keane J, Harris S
Genome Biol
. 2015 Dec;
16:294.
PMID: 26714481
The assembly of DNA sequence data is undergoing a renaissance thanks to emerging technologies capable of producing reads tens of kilobases long. Assembling complete bacterial and small eukaryotic genomes is...
8.
Tsai I, Zarowiecki M, Holroyd N, Garciarrubio A, Sanchez-Flores A, Brooks K, et al.
Nature
. 2013 Mar;
496(7443):57-63.
PMID: 23485966
Tapeworms (Cestoda) cause neglected diseases that can be fatal and are difficult to treat, owing to inefficient drugs. Here we present an analysis of tapeworm genome sequences using the human-infective...
9.
Protasio A, Tsai I, Babbage A, Nichol S, Hunt M, Aslett M, et al.
PLoS Negl Trop Dis
. 2012 Jan;
6(1):e1455.
PMID: 22253936
Schistosomiasis is one of the most prevalent parasitic diseases, affecting millions of people in developing countries. Amongst the human-infective species, Schistosoma mansoni is also the most commonly used in the...
10.
Logan-Klumpler F, De Silva N, Boehme U, Rogers M, Velarde G, McQuillan J, et al.
Nucleic Acids Res
. 2011 Nov;
40(Database issue):D98-108.
PMID: 22116062
GeneDB (http://www.genedb.org) is a genome database for prokaryotic and eukaryotic pathogens and closely related organisms. The resource provides a portal to genome sequence and annotation data, which is primarily generated...