Niklaas Colaert
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Explore the profile of Niklaas Colaert including associated specialties, affiliations and a list of published articles.
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23
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Recent Articles
1.
Maddelein D, Colaert N, Buchanan I, Hulstaert N, Gevaert K, Martens L
Nucleic Acids Res
. 2015 Apr;
43(W1):W543-6.
PMID: 25897125
The iceLogo web server and SOAP service implement the previously published iceLogo algorithm. iceLogo builds on probability theory to visualize protein consensus sequences in a format resembling sequence logos. Peptide...
2.
Colaert N, Maddelein D, Impens F, Van Damme P, Plasman K, Helsens K, et al.
Nucleic Acids Res
. 2012 Oct;
41(Database issue):D333-7.
PMID: 23093603
We here present The Online Protein Processing Resource (TOPPR; http://iomics.ugent.be/toppr/), an online database that contains thousands of published proteolytically processed sites in human and mouse proteins. These cleavage events were...
3.
Tondeleir D, Lambrechts A, Muller M, Jonckheere V, Doll T, Vandamme D, et al.
Mol Cell Proteomics
. 2012 Mar;
11(8):255-71.
PMID: 22448045
Vertebrate nonmuscle cells express two actin isoforms: cytoplasmic β- and γ-actin. Because of the presence and localized translation of β-actin at the leading edge, this isoform is generally accepted to...
4.
Kouyianou K, De Bock P, Colaert N, Nikolaki A, Aktoudianaki A, Gevaert K, et al.
Proteomics
. 2011 Nov;
12(1):63-7.
PMID: 22065552
In this study, we performed the first large-scale identification of N-terminal peptides from the green sulfur bacterium Chlorobaculum tepidum. Combined fractional diagonal chromatography (COFRADIC) was used to isolate protein N-terminal...
5.
Colaert N, Degroeve S, Helsens K, Martens L
J Proteome Res
. 2011 Oct;
10(12):5555-61.
PMID: 21995378
Proteome identification using peptide-centric proteomics techniques is a routinely used analysis technique. One of the most powerful and popular methods for the identification of peptides from MS/MS spectra is protein...
6.
Colaert N, Barsnes H, Vaudel M, Helsens K, Timmerman E, Sickmann A, et al.
J Proteome Res
. 2011 Jul;
10(8):3840-3.
PMID: 21714566
The Thermo Proteome Discoverer program integrates both peptide identification and quantification into a single workflow for peptide-centric proteomics. Furthermore, its close integration with Thermo mass spectrometers has made it increasingly...
7.
Colaert N, Gevaert K, Martens L
J Proteome Res
. 2011 May;
10(7):3183-9.
PMID: 21604685
Mass spectrometry-driven proteomics is increasingly relying on quantitative analyses for biological discoveries. As a result, different methods and algorithms have been developed to perform relative or absolute quantification based on...
8.
Colaert N, Vandekerckhove J, Martens L, Gevaert K
Methods Mol Biol
. 2011 May;
753:373-98.
PMID: 21604136
MS-driven proteomics has evolved over the past two decades to a high tech and high impact research field. Two distinct factors clearly influenced its expansion: the rapid growth of an...
9.
Colaert N, Van Huele C, Degroeve S, Staes A, Vandekerckhove J, Gevaert K, et al.
Nat Methods
. 2011 May;
8(6):481-3.
PMID: 21552256
We here describe a normalization method to combine quantitative proteomics data. By merging the output of two popular quantification software packages, we obtained a 20% increase (on average) in the...
10.
Ghesquiere B, Jonckheere V, Colaert N, Van Durme J, Timmerman E, Goethals M, et al.
Mol Cell Proteomics
. 2011 Mar;
10(5):M110.006866.
PMID: 21406390
We here present a new method to measure the degree of protein-bound methionine sulfoxide formation at a proteome-wide scale. In human Jurkat cells that were stressed with hydrogen peroxide, over...