Nathaniel L Matteson
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Explore the profile of Nathaniel L Matteson including associated specialties, affiliations and a list of published articles.
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14
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1110
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Recent Articles
1.
Matteson N, W Hassler G, Kurzban E, Schwab M, Perkins S, Gangavarapu K, et al.
Cell
. 2023 Dec;
186(26):5690-5704.e20.
PMID: 38101407
The maturation of genomic surveillance in the past decade has enabled tracking of the emergence and spread of epidemics at an unprecedented level. During the COVID-19 pandemic, for example, genomic...
2.
Gangavarapu K, Latif A, Mullen J, Alkuzweny M, Hufbauer E, Tsueng G, et al.
Nat Methods
. 2023 Feb;
20(4):512-522.
PMID: 36823332
In response to the emergence of SARS-CoV-2 variants of concern, the global scientific community, through unprecedented effort, has sequenced and shared over 11 million genomes through GISAID, as of May...
3.
Parker E, Anderson C, Zeller M, Tibi A, Havens J, Laroche G, et al.
Nat Commun
. 2022 Aug;
13(1):4784.
PMID: 35970983
Regional connectivity and land travel have been identified as important drivers of SARS-CoV-2 transmission. However, the generalizability of this finding is understudied outside of well-sampled, highly connected regions. In this...
4.
Pekar J, Magee A, Parker E, Moshiri N, Izhikevich K, Havens J, et al.
Science
. 2022 Jul;
377(6609):960-966.
PMID: 35881005
Understanding the circumstances that lead to pandemics is important for their prevention. We analyzed the genomic diversity of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) early in the coronavirus disease...
5.
Karthikeyan S, Levy J, de Hoff P, Humphrey G, Birmingham A, Jepsen K, et al.
Nature
. 2022 Jul;
609(7925):101-108.
PMID: 35798029
As SARS-CoV-2 continues to spread and evolve, detecting emerging variants early is critical for public health interventions. Inferring lineage prevalence by clinical testing is infeasible at scale, especially in areas...
6.
Gangavarapu K, Latif A, Mullen J, Alkuzweny M, Hufbauer E, Tsueng G, et al.
Res Sq
. 2022 Jul;
PMID: 35794893
The emergence of SARS-CoV-2 variants of concern has prompted the need for near real-time genomic surveillance to inform public health interventions. In response to this need, the global scientific community,...
7.
Karthikeyan S, Levy J, de Hoff P, Humphrey G, Birmingham A, Jepsen K, et al.
medRxiv
. 2022 Apr;
PMID: 35411350
As SARS-CoV-2 continues to spread and evolve, detecting emerging variants early is critical for public health interventions. Inferring lineage prevalence by clinical testing is infeasible at scale, especially in areas...
8.
Zeller M, Gangavarapu K, Anderson C, Smither A, Vanchiere J, Rose R, et al.
Cell
. 2021 Sep;
184(19):4939-4952.e15.
PMID: 34508652
The emergence of the COVID-19 epidemic in the United States (U.S.) went largely undetected due to inadequate testing. New Orleans experienced one of the earliest and fastest accelerating outbreaks, coinciding...
9.
Cantrell K, Fedarko M, Rahman G, McDonald D, Yang Y, Zaw T, et al.
mSystems
. 2021 Mar;
6(2).
PMID: 33727399
Standard workflows for analyzing microbiomes often include the creation and curation of phylogenetic trees. Here we present EMPress, an interactive web tool for visualizing trees in the context of microbiome,...
10.
Zeller M, Gangavarapu K, Anderson C, Smither A, Vanchiere J, Rose R, et al.
medRxiv
. 2021 Feb;
PMID: 33564781
The emergence of the early COVID-19 epidemic in the United States (U.S.) went largely undetected, due to a lack of adequate testing and mitigation efforts. The city of New Orleans,...