Nadia Tahiri
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Explore the profile of Nadia Tahiri including associated specialties, affiliations and a list of published articles.
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10
Citations
15
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Recent Articles
1.
Farnia M, Tahiri N
Algorithms Mol Biol
. 2024 Oct;
19(1):22.
PMID: 39369262
The B cell lineage tree encapsulates the successive phases of B cell differentiation and maturation, transitioning from hematopoietic stem cells to mature, antibody-secreting cells within the immune system. Mathematically, this...
2.
Li W, Koshkarov A, Tahiri N
Ecol Evol
. 2024 Aug;
14(8):e70054.
PMID: 39119174
Phylogenetic trees represent the evolutionary relationships and ancestry of various species or groups of organisms. Comparing these trees by measuring the distance between them is essential for applications such as...
3.
Li W, Tahiri N
Viruses
. 2024 Jul;
16(7).
PMID: 39066295
Bats, with their virus tolerance, social behaviors, and mobility, are reservoirs for emerging viruses, including coronaviruses (CoVs) known for genetic flexibility. Studying the cophylogenetic link between bats and CoVs provides...
4.
Koshkarov A, Tahiri N
Bioinform Adv
. 2023 Apr;
3(1):vbad023.
PMID: 37056516
Summary: For many years, evolutionary and molecular biologists have been working with phylogenetic supertrees, which are oriented acyclic graph structures. In the standard approaches, supertrees are obtained by concatenating a...
5.
Chabane N, Bouaoune A, Tighilt R, Abdar M, Boc A, Lord E, et al.
PLoS One
. 2022 Dec;
17(12):e0278364.
PMID: 36454766
Next basket recommendation is a critical task in market basket data analysis. It is particularly important in grocery shopping, where grocery lists are an essential part of shopping habits of...
6.
Tahiri N, Veriga A, Koshkarov A, Morozov B
J Bioinform Comput Biol
. 2022 Jul;
20(4):2250012.
PMID: 35798684
The evolutionary histories of genes are susceptible of differing greatly from each other which could be explained by evolutionary variations in horizontal gene transfers or biological recombinations. A phylogenetic tree...
7.
Tahiri N, Fichet B, Makarenkov V
Bioinformatics
. 2022 May;
38(13):3367-3376.
PMID: 35579343
Motivation: Each gene has its own evolutionary history which can substantially differ from evolutionary histories of other genes. For example, some individual genes or operons can be affected by specific...
8.
Kuitche E, Qi Y, Tahiri N, Parmer J, Ouangraoua A
Bioinformatics
. 2020 Oct;
37(13):1920-1922.
PMID: 33051656
Motivation: A phylogenetic tree reconciliation is a mapping of one phylogenetic tree onto another which represents the co-evolution of two sets of taxa (e.g. parasite-host co-evolution, gene-species co-evolution). The reconciliation...
9.
Tahiri N, Willems M, Makarenkov V
BMC Evol Biol
. 2018 Apr;
18(1):48.
PMID: 29621975
Background: Gene trees carry important information about specific evolutionary patterns which characterize the evolution of the corresponding gene families. However, a reliable species consensus tree cannot be inferred from a...
10.
Willems M, Tahiri N, Makarenkov V
J Bioinform Comput Biol
. 2014 Sep;
12(5):1450024.
PMID: 25219384
Several algorithms and software have been developed for inferring phylogenetic trees. However, there exist some biological phenomena such as hybridization, recombination, or horizontal gene transfer which cannot be represented by...