Michal Ziv-Ukelson
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Explore the profile of Michal Ziv-Ukelson including associated specialties, affiliations and a list of published articles.
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Citations
384
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Recent Articles
1.
Ozeri E, Zehavi M, Ziv-Ukelson M
Algorithms Mol Biol
. 2023 Dec;
18(1):17.
PMID: 38037088
We define two new computational problems in the domain of perfect genome rearrangements, and propose three algorithms to solve them. The rearrangement scenarios modeled by the problems consider Reversal and...
2.
Naor-Hoffmann S, Svetlitsky D, Sal-Man N, Orenstein Y, Ziv-Ukelson M
BMC Bioinformatics
. 2022 Jun;
23(1):253.
PMID: 35751023
Background: The human body is inhabited by a diverse community of commensal non-pathogenic bacteria, many of which are essential for our health. By contrast, pathogenic bacteria have the ability to...
3.
Zimerman G, Svetlitsky D, Zehavi M, Ziv-Ukelson M
Algorithms Mol Biol
. 2021 Jul;
16(1):16.
PMID: 34243815
Gene clusters are groups of genes that are co-locally conserved across various genomes, not necessarily in the same order. Their discovery and analysis is valuable in tasks such as gene...
4.
Svetlitsky D, Dagan T, Ziv-Ukelson M
Bioinformatics
. 2020 Jul;
36(Suppl_1):i21-i29.
PMID: 32657415
Motivation: An important task in comparative genomics is to detect functional units by analyzing gene-context patterns. Colinear syntenic blocks (CSBs) are groups of genes that are consistently encoded in the...
5.
Zoller R, Zehavi M, Ziv-Ukelson M
J Comput Biol
. 2020 Apr;
27(11):1561-1580.
PMID: 32250165
An important goal in microbial computational genomics is to identify crucial events in the evolution of a gene that severely alter the duplication, loss, and mobilization patterns of the gene...
6.
7.
Barash E, Sal-Man N, Sabato S, Ziv-Ukelson M
Bioinformatics
. 2018 Nov;
35(12):2001-2008.
PMID: 30407484
Motivation: Bacterial infections are a major cause of illness worldwide. However, most bacterial strains pose no threat to human health and may even be beneficial. Thus, developing powerful diagnostic bioinformatic...
8.
Svetlitsky D, Dagan T, Chalifa-Caspi V, Ziv-Ukelson M
Bioinformatics
. 2018 Oct;
35(10):1634-1643.
PMID: 30321308
Motivation: Identification of conserved syntenic blocks across microbial genomes is important for several problems in comparative genomics such as gene annotation, study of genome organization and evolution and prediction of...
9.
Benshahar A, Chalifa-Caspi V, Hermelin D, Ziv-Ukelson M
J Comput Biol
. 2017 Oct;
25(2):214-235.
PMID: 29028176
We formalize a new problem variant in gene-block discovery, denoted Reference-Anchored Gene Blocks (RAGB), given a query sequence Q of length n, representing the gene array of a DNA element,...
10.
Smoly I, Lerman E, Ziv-Ukelson M, Yeger-Lotem E
Bioinformatics
. 2017 Feb;
33(12):1907-1909.
PMID: 28165111
Summary: Network motifs are small topological patterns that recur in a network significantly more often than expected by chance. Their identification emerged as a powerful approach for uncovering the design...