Matthew Vaughn
Overview
Explore the profile of Matthew Vaughn including associated specialties, affiliations and a list of published articles.
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18
Citations
1264
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0
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Recent Articles
1.
Swetnam T, Antin P, Bartelme R, Bucksch A, Camhy D, Chism G, et al.
PLoS Comput Biol
. 2024 Feb;
20(2):e1011270.
PMID: 38324613
CyVerse, the largest publicly-funded open-source research cyberinfrastructure for life sciences, has played a crucial role in advancing data-driven research since the 2010s. As the technology landscape evolved with the emergence...
2.
Bolduc B, Zablocki O, Guo J, Zayed A, Vik D, Dehal P, et al.
ISME Commun
. 2023 Feb;
1(1):77.
PMID: 36765102
Microbes drive myriad ecosystem processes, but under strong influence from viruses. Because studying viruses in complex systems requires different tools than those for microbes, they remain underexplored. To combat this,...
3.
Garcia B, Urrutia J, Zheng G, Becker D, Corbet C, Maschhoff P, et al.
Synth Biol (Oxf)
. 2022 Aug;
7(1):ysac012.
PMID: 36035514
Sequencing technologies, in particular RNASeq, have become critical tools in the design, build, test and learn cycle of synthetic biology. They provide a better understanding of synthetic designs, and they...
4.
Singer J, Novotney S, Strickland D, Haddox H, Leiby N, Rocklin G, et al.
PLoS One
. 2022 Mar;
17(3):e0265020.
PMID: 35286324
Engineered proteins generally must possess a stable structure in order to achieve their designed function. Stable designs, however, are astronomically rare within the space of all possible amino acid sequences....
5.
Eslami M, Borujeni A, Eramian H, Weston M, Zheng G, Urrutia J, et al.
Bioinformatics
. 2021 Sep;
38(2):404-409.
PMID: 34570169
Motivation: Applications in synthetic and systems biology can benefit from measuring whole-cell response to biochemical perturbations. Execution of experiments to cover all possible combinations of perturbations is infeasible. In this...
6.
The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology
Friesner J, Assmann S, Bastow R, Bailey-Serres J, Beynon J, Brendel V, et al.
Plant Physiol
. 2017 Dec;
175(4):1499-1509.
PMID: 29208732
No abstract available.
7.
Merchant N, Lyons E, Goff S, Vaughn M, Ware D, Micklos D, et al.
PLoS Biol
. 2016 Jan;
14(1):e1002342.
PMID: 26752627
The iPlant Collaborative provides life science research communities access to comprehensive, scalable, and cohesive computational infrastructure for data management; identity management; collaboration tools; and cloud, high-performance, high-throughput computing. iPlant provides...
8.
Conrad D, Vaughn M, Grembowski D, Marcus-Smith M
Med Care Res Rev
. 2015 Nov;
73(4):437-57.
PMID: 26545852
This article develops a conceptual framework for implementation of value-based payment (VBP) reform and then draws on that framework to systematically examine six distinct multi-stakeholder coalition VBP initiatives in three...
9.
Krishnakumar V, Hanlon M, Contrino S, Ferlanti E, Karamycheva S, Kim M, et al.
Nucleic Acids Res
. 2014 Nov;
43(Database issue):D1003-9.
PMID: 25414324
The Arabidopsis Information Portal (https://www.araport.org) is a new online resource for plant biology research. It houses the Arabidopsis thaliana genome sequence and associated annotation. It was conceived as a framework...
10.
Leduc R, Vaughn M, Fonner J, Sullivan M, Williams J, Blood P, et al.
J Am Med Inform Assoc
. 2013 Aug;
21(2):195-9.
PMID: 23964072
In the USA, the national cyberinfrastructure refers to a system of research supercomputer and other IT facilities and the high speed networks that connect them. These resources have been heavily...