Matt Pennell
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Explore the profile of Matt Pennell including associated specialties, affiliations and a list of published articles.
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Recent Articles
11.
Voss K, Kaur K, Banerjee R, Breden F, Pennell M
bioRxiv
. 2024 Jun;
PMID: 38853833
The adaptive immune response relies on a diverse repertoire of B-cell receptors, each of which is characterized by a distinct sequence resulting from VDJ-recombination. Upon binding to an antigen, B-cells...
12.
Schraiber J, Edge M, Pennell M
bioRxiv
. 2024 Mar;
PMID: 38496530
In both statistical genetics and phylogenetics, a major goal is to identify correlations between genetic loci or other aspects of the phenotype or environment and a focal trait. In these...
13.
David K, Harrison M, Opulente D, LaBella A, Wolters J, Zhou X, et al.
Proc Natl Acad Sci U S A
. 2024 Feb;
121(10):e2316031121.
PMID: 38412132
The Saccharomycotina yeasts ("yeasts" hereafter) are a fungal clade of scientific, economic, and medical significance. Yeasts are highly ecologically diverse, found across a broad range of environments in every biome...
14.
Dimayacyac J, Wu S, Jiang D, Pennell M
Genome Biol Evol
. 2023 Nov;
15(12).
PMID: 38000902
Phylogenetic comparative methods are increasingly used to test hypotheses about the evolutionary processes that drive divergence in gene expression among species. However, it is unknown whether the distributional assumptions of...
15.
16.
David K, Harrison M, Opulente D, LaBella A, Wolters J, Zhou X, et al.
bioRxiv
. 2023 Sep;
PMID: 37693602
The Saccharomycotina yeasts ("yeasts" hereafter) are a fungal clade of scientific, economic, and medical significance. Yeasts are highly ecologically diverse, found across a broad range of environments in every biome...
17.
Dimayacyac J, Wu S, Jiang D, Pennell M
bioRxiv
. 2023 Aug;
PMID: 37645857
Phylogenetic comparative methods are increasingly used to test hypotheses about the evolutionary processes that drive divergence in gene expression among species. However, it is unknown whether the distributional assumptions of...
18.
Jiang D, Cope A, Zhang J, Pennell M
Mol Biol Evol
. 2023 Jul;
40(8).
PMID: 37498582
Variation in gene expression across lineages is thought to explain much of the observed phenotypic variation and adaptation. The protein is closer to the target of natural selection but gene...
19.
Rolland J, Henao-Diaz L, Doebeli M, Germain R, Harmon L, Lacey Knowles L, et al.
Nat Ecol Evol
. 2023 Jul;
7(8):1181-1193.
PMID: 37429904
Explaining broad molecular, phenotypic and species biodiversity patterns necessitates a unifying framework spanning multiple evolutionary scales. Here we argue that although substantial effort has been made to reconcile microevolution and...
20.
Henao-Diaz L, Pennell M
Syst Biol
. 2023 May;
72(5):1188-1198.
PMID: 37248967
Evolutionary dynamics operating across deep time leave footprints in the shapes of phylogenetic trees. For the last several decades, researchers have used increasingly large and robust phylogenies to study the...