Mateusz Drach
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Explore the profile of Mateusz Drach including associated specialties, affiliations and a list of published articles.
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14
Citations
43
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Recent Articles
1.
Panczyk K, Gaweda K, Drach M, Plazinski W
J Phys Chem B
. 2018 Mar;
122(14):3696-3710.
PMID: 29558620
An extension of the GROMOS 56a6 force field for hexopyranose-based carbohydrates is presented. The additional parameters describe the conformational properties of uronate residues. The three distinct chemical states of the...
2.
Plazinski W, Plazinska A, Drach M
Phys Chem Chem Phys
. 2016 Mar;
18(14):9626-35.
PMID: 26996921
The molecular properties of aldohexoses and ketohexoses are usually studied in the context of their cyclic, furanose or pyranose structures which is due to the abundance of related tautomeric forms...
3.
Plazinski W, Drach M, Plazinska A
Carbohydr Res
. 2016 Feb;
423:43-8.
PMID: 26878487
Enhanced-sampling molecular dynamics simulations performed within the GROMOS 56a6CARBO_R force field were applied in order to elucidate ring-inversion properties of hexopyranose residues in a chain for the case of α(1→n)...
4.
Plazinski W, Drach M
Carbohydr Res
. 2015 Sep;
416:41-50.
PMID: 26343326
The shape of the hexopyranose ring is an important factor which can influence the properties of carbohydrate molecules and affect their biological activity. Due to a limited availability of the...
5.
Plazinski W, Drach M
Carbohydr Res
. 2015 Aug;
415:17-27.
PMID: 26279522
The conformation of the carbohydrate molecules is a subject of many theoretical and experimental studies. The different timescales associated with the particular degrees of freedom hinder the progress in both...
6.
Plazinski W, Plazinska A, Drach M
Phys Chem Chem Phys
. 2015 Jul;
17(33):21622-9.
PMID: 26226084
The hexopyranose mutarotation is an important focus for carbohydrate chemistry for more than 150 years. The paper describes the results of advanced computational studies aimed at elucidating the ring-opening reaction...
7.
Nieszporek K, Drach M
Phys Chem Chem Phys
. 2014 Nov;
17(2):1018-24.
PMID: 25410377
We studied the permeability of graphene sheets with designed nanopores using the classical molecular dynamics. To characterize the energy profile for transmission we calculated the potential of the mean force....
8.
Plazinski W, Drach M
J Phys Chem B
. 2013 Sep;
117(40):12105-12.
PMID: 24041376
The interactions of divalent calcium ions with a single α-L-guluronate anion and oligo(α-L-guluronate) chain have been studied in terms of the 'hybrid' molecular dynamics technique in which the selected parts...
9.
Vijayaraghavan S, Ecija D, Auwarter W, Joshi S, Seufert K, Drach M, et al.
Chemistry
. 2013 Sep;
19(42):14143-50.
PMID: 24000003
The formation of 2D surface-confined supramolecular porous networks is scientifically and technologically appealing, notably for hosting guest species and confinement phenomena. In this study, we report a scanning tunneling microscopy...
10.
Panczyk T, Szabelski P, Drach M
J Colloid Interface Sci
. 2012 Jul;
383(1):55-62.
PMID: 22795039
In this paper we propose an implicit solvent model which can be used in molecular dynamics simulations of systems comprising colloid nanoparticles and carbon nanotubes. Such systems, due to finite...