Martin Middendorf
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Explore the profile of Martin Middendorf including associated specialties, affiliations and a list of published articles.
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Articles
47
Citations
3633
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Recent Articles
1.
Hartmann T, Middendorf M, Bernt M
Methods Mol Biol
. 2024 May;
2802:215-245.
PMID: 38819562
Genome rearrangements are mutations that change the gene content of a genome or the arrangement of the genes on a genome. Several years of research on genome rearrangements have established...
2.
Fiedler L, Bernt M, Middendorf M
Bioinform Adv
. 2024 May;
4(1):vbae072.
PMID: 38799704
Summary: DeGeCI is a command line tool that generates fully automated gene predictions from mitochondrial nucleotide sequences by using a reference database of annotated mitogenomes which is represented as a...
3.
Fiedler L, Middendorf M, Bernt M
Front Genet
. 2023 Aug;
14:1250907.
PMID: 37636259
A wide range of scientific fields, such as forensics, anthropology, medicine, and molecular evolution, benefits from the analysis of mitogenomic data. With the development of new sequencing technologies, the amount...
4.
Fiedler L, Bernt M, Middendorf M, Stadler P
BMC Bioinformatics
. 2023 Jun;
24(1):235.
PMID: 37277700
Background: Identifying the locations of gene breakpoints between species of different taxonomic groups can provide useful insights into the underlying evolutionary processes. Given the exact locations of their genes, the...
5.
Gernat T, Jagla T, Jones B, Middendorf M, Robinson G
Sci Rep
. 2023 Jan;
13(1):1541.
PMID: 36707534
Barcode-based tracking of individuals is revolutionizing animal behavior studies, but further progress hinges on whether in addition to determining an individual's location, specific behaviors can be identified and monitored. We...
6.
Le H, Geser P, Middendorf M
Evol Comput
. 2021 Sep;
29(3):415-439.
PMID: 34467994
The two-machine permutation flow shop scheduling problem with buffer is studied for the special case that all processing times on one of the two machines are equal to a constant...
7.
Zhao Q, Yan B, Shi Y, Middendorf M
IEEE Trans Cybern
. 2021 Mar;
52(7):6119-6130.
PMID: 33729970
Dynamic multiobjective optimization problems are challenging due to their fast convergence and diversity maintenance requirements. Prediction-based evolutionary algorithms currently gain much attention for meeting these requirements. However, it is not...
8.
Individual differences in honey bee behavior enabled by plasticity in brain gene regulatory networks
Jones B, Rao V, Gernat T, Jagla T, Cash-Ahmed A, Rubin B, et al.
Elife
. 2020 Dec;
9.
PMID: 33350385
Understanding the regulatory architecture of phenotypic variation is a fundamental goal in biology, but connections between gene regulatory network (GRN) activity and individual differences in behavior are poorly understood. We...
9.
Kafer S, Paraskevopoulou S, Zirkel F, Wieseke N, Donath A, Petersen M, et al.
PLoS Pathog
. 2019 Dec;
15(12):e1008224.
PMID: 31830128
The spectrum of viruses in insects is important for subjects as diverse as public health, veterinary medicine, food production, and biodiversity conservation. The traditional interest in vector-borne diseases of humans...
10.
Donath A, Juhling F, Al-Arab M, Bernhart S, Reinhardt F, Stadler P, et al.
Nucleic Acids Res
. 2019 Oct;
47(20):10543-10552.
PMID: 31584075
With the rapid increase of sequenced metazoan mitochondrial genomes, a detailed manual annotation is becoming more and more infeasible. While it is easy to identify the approximate location of protein-coding...