Lakshmi K Matukumalli
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Explore the profile of Lakshmi K Matukumalli including associated specialties, affiliations and a list of published articles.
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2965
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Recent Articles
11.
Gibbs R, Taylor J, Van Tassell C, Barendse W, Eversole K, Gill C, et al.
Science
. 2009 Apr;
324(5926):528-32.
PMID: 19390050
The imprints of domestication and breed development on the genomes of livestock likely differ from those of companion animals. A deep draft sequence assembly of shotgun reads from a single...
12.
Elsik C, Tellam R, Worley K, Gibbs R, Muzny D, Weinstock G, et al.
Science
. 2009 Apr;
324(5926):522-8.
PMID: 19390049
To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set...
13.
Liu G, Weirauch M, Van Tassell C, Li R, Sonstegard T, Matukumalli L, et al.
Genomics Proteomics Bioinformatics
. 2009 Mar;
6(3-4):129-43.
PMID: 19329064
A systematic phylogenetic footprinting approach was performed to identify conserved transcription factor binding sites (TFBSs) in mammalian promoter regions using human, mouse and rat sequence alignments. We found that the...
14.
McDaneld T, Smith T, Doumit M, Miles J, Coutinho L, Sonstegard T, et al.
BMC Genomics
. 2009 Feb;
10:77.
PMID: 19208255
Background: MicroRNA (miR) are a class of small RNAs that regulate gene expression by inhibiting translation of protein encoding transcripts. To evaluate the role of miR in skeletal muscle of...
15.
McKay S, Schnabel R, Murdoch B, Matukumalli L, Aerts J, Coppieters W, et al.
BMC Genet
. 2008 May;
9:37.
PMID: 18492244
Background: Analyses of population structure and breed diversity have provided insight into the origin and evolution of cattle. Previously, these studies have used a low density of microsatellite markers, however,...
16.
SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries
Van Tassell C, Smith T, Matukumalli L, Taylor J, Schnabel R, Lawley C, et al.
Nat Methods
. 2008 Feb;
5(3):247-52.
PMID: 18297082
High-density single-nucleotide polymorphism (SNP) arrays have revolutionized the ability of genome-wide association studies to detect genomic regions harboring sequence variants that affect complex traits. Extensive numbers of validated SNPs with...
17.
Hyten D, Song Q, Choi I, Yoon M, Specht J, Matukumalli L, et al.
Theor Appl Genet
. 2008 Feb;
116(7):945-52.
PMID: 18278477
Large numbers of single nucleotide polymorphism (SNP) markers are now available for a number of crop species. However, the high-throughput methods for multiplexing SNP assays are untested in complex genomes,...
18.
McKay S, Schnabel R, Murdoch B, Matukumalli L, Aerts J, Coppieters W, et al.
BMC Genet
. 2007 Oct;
8:74.
PMID: 17961247
Background: Bovine whole genome linkage disequilibrium maps were constructed for eight breeds of cattle. These data provide fundamental information concerning bovine genome organization which will allow the design of studies...
19.
Snelling W, Chiu R, Schein J, Hobbs M, Abbey C, Adelson D, et al.
Genome Biol
. 2007 Aug;
8(8):R165.
PMID: 17697342
Background: Cattle are important agriculturally and relevant as a model organism. Previously described genetic and radiation hybrid (RH) maps of the bovine genome have been used to identify genomic regions...
20.
Choi I, Hyten D, Matukumalli L, Song Q, Chaky J, Quigley C, et al.
Genetics
. 2007 Mar;
176(1):685-96.
PMID: 17339218
The first genetic transcript map of the soybean genome was created by mapping one SNP in each of 1141 genes in one or more of three recombinant inbred line mapping...