Kyung Hoi Joseph Min
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Explore the profile of Kyung Hoi Joseph Min including associated specialties, affiliations and a list of published articles.
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9
Citations
448
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Recent Articles
1.
Jones M, Sun D, Min K, Colgan W, Tian L, Weir J, et al.
bioRxiv
. 2024 Nov;
PMID: 39484491
Tumor progression is driven by dynamic interactions between cancer cells and their surrounding microenvironment. Investigating the spatiotemporal evolution of tumors can provide crucial insights into how intrinsic changes within cancer...
2.
Sullivan D, Min K, Hjorleifsson K, Luebbert L, Holley G, Moses L, et al.
Nat Protoc
. 2024 Oct;
20(3):587-607.
PMID: 39390263
The term 'RNA-seq' refers to a collection of assays based on sequencing experiments that involve quantifying RNA species from bulk tissue, single cells or single nuclei. The kallisto, bustools and...
3.
Booeshaghi A, Min K, Gehring J, Pachter L
Bioinform Adv
. 2024 Jan;
4(1):vbad181.
PMID: 38213823
Summary: Barcode-based sequence census assays utilize custom or random oligonucloetide sequences to label various biological features, such as cell-surface proteins or CRISPR perturbations. These assays all rely on barcode quantification,...
4.
Sullivan D, Min K, Hjorleifsson K, Luebbert L, Holley G, Moses L, et al.
bioRxiv
. 2023 Dec;
PMID: 38045414
The term "RNA-seq" refers to a collection of assays based on sequencing experiments that involve quantifying RNA species from bulk tissue, from single cells, or from single nuclei. The kallisto,...
5.
Galvez-Merchan A, Min K, Pachter L, Booeshaghi A
Bioinformatics
. 2023 Jan;
39(1).
PMID: 36610997
Motivation: Several genomic databases host data and metadata for an ever-growing collection of sequence datasets. While these databases have a shared hierarchical structure, there are no tools specifically designed to...
6.
Booeshaghi A, Kil Y, Min K, Gehring J, Pachter L
HardwareX
. 2022 May;
10:e00201.
PMID: 35607693
We present colosseum, a low-cost, modular, and automated fluid sampling device for scalable fluidic applications. The colosseum fraction collector uses a single motor, can be built for less than $100...
7.
Yang D, Jones M, Naranjo S, Rideout 3rd W, Min K, Ho R, et al.
Cell
. 2022 May;
185(11):1905-1923.e25.
PMID: 35523183
Tumor evolution is driven by the progressive acquisition of genetic and epigenetic alterations that enable uncontrolled growth and expansion to neighboring and distal tissues. The study of phylogenetic relationships between...
8.
Qiu X, Zhang Y, Martin-Rufino J, Weng C, Hosseinzadeh S, Yang D, et al.
Cell
. 2022 Feb;
185(4):690-711.e45.
PMID: 35108499
Single-cell (sc)RNA-seq, together with RNA velocity and metabolic labeling, reveals cellular states and transitions at unprecedented resolution. Fully exploiting these data, however, requires kinetic models capable of unveiling governing regulatory...
9.
Melsted P, Booeshaghi A, Liu L, Gao F, Lu L, Min K, et al.
Nat Biotechnol
. 2021 Apr;
39(7):813-818.
PMID: 33795888
We describe a workflow for preprocessing of single-cell RNA-sequencing data that balances efficiency and accuracy. Our workflow is based on the kallisto and bustools programs, and is near optimal in...