Koro Nishikata
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Explore the profile of Koro Nishikata including associated specialties, affiliations and a list of published articles.
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9
Citations
487
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Recent Articles
1.
Otsubo T, Yamada K, Hagiwara T, Oshima K, Iida K, Nishikata K, et al.
Oncotarget
. 2017 Nov;
8(48):84434-84448.
PMID: 29137437
Esophageal squamous cell carcinoma (ESCC) is associated with the accumulation of genetic and epigenetic changes in the background mucosa. Dysregulated DNA methylation is known to lead to the inactivation of...
2.
Nishikata K, Fuchigami S, Ikeguchi M, Kidera A
Biophysics (Nagoya-shi)
. 2016 Nov;
6:27-36.
PMID: 27857583
The halobacterial transducer of sensory rhodopsin II (HtrII) is a photosignal transducer associated with phototaxis in extreme halophiles. The HAMP domain, a linker domain in HtrII, is considered to play...
3.
Lizio M, Harshbarger J, Shimoji H, Severin J, Kasukawa T, Sahin S, et al.
Genome Biol
. 2015 Feb;
16:22.
PMID: 25723102
The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and...
4.
Nishikata K, Cox 3rd R, Shimoyama S, Yoshida Y, Matsui M, Makita Y, et al.
ACS Synth Biol
. 2013 Dec;
3(3):192-6.
PMID: 24364365
Synthetic promoters can control a gene's timing, location, and expression level. The PromoterCAD web server ( http://promotercad.org ) allows the design of synthetic promoters to control plant gene expression, by...
5.
Cox 3rd R, Nishikata K, Shimoyama S, Yoshida Y, Matsui M, Makita Y, et al.
Nucleic Acids Res
. 2013 Jun;
41(Web Server issue):W569-74.
PMID: 23766287
Synthetic promoters can control the timing, location and amount of gene expression for any organism. PromoterCAD is a web application for designing synthetic promoters with altered transcriptional regulation. We use...
6.
Makita Y, Kobayashi N, Yoshida Y, Doi K, Mochizuki Y, Nishikata K, et al.
Nucleic Acids Res
. 2013 Jun;
41(Web Server issue):W109-14.
PMID: 23761449
Positional MEDLINE (PosMed; http://biolod.org/PosMed) is a powerful Semantic Web Association Study engine that ranks biomedical resources such as genes, metabolites, diseases and drugs, based on the statistical significance of associations...
7.
Asada Y, Sugahara M, Mizutani H, Naitow H, Tanaka T, Matsuura Y, et al.
Acta Crystallogr D Biol Crystallogr
. 2013 May;
69(Pt 5):914-9.
PMID: 23633602
Information from structural genomics experiments at the RIKEN SPring-8 Center, Japan has been compiled and published as an integrated database. The contents of the database are (i) experimental data from...
8.
Nishikata K, Ikeguchi M, Kidera A
Biochemistry
. 2012 Jul;
51(30):5958-66.
PMID: 22757657
The complex of sensory rhodopsin II (SRII) and its cognate transducer HtrII (2:2 SRII-HtrII complex) consists of a photoreceptor and its signal transducer, respectively, associated with negative phototaxis in extreme...
9.
Masuya H, Makita Y, Kobayashi N, Nishikata K, Yoshida Y, Mochizuki Y, et al.
Nucleic Acids Res
. 2010 Nov;
39(Database issue):D861-70.
PMID: 21076152
The RIKEN integrated database of mammals (http://scinets.org/db/mammal) is the official undertaking to integrate its mammalian databases produced from multiple large-scale programs that have been promoted by the institute. The database...