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Karolina Jodkowska

Explore the profile of Karolina Jodkowska including associated specialties, affiliations and a list of published articles. Areas
Snapshot
Articles 7
Citations 142
Followers 0
Related Specialties
Biochemistry
Science
Oncology
Top 10 Co-Authors
Dariusz Plewczynski
Yijun Ruan
Ping Wang
Jacqueline Jufen Zhu
Byoungkoo Lee
Krzysztof Banecki
Juan Mendez
Jesse Aaron
Zofia Parteka-Tojek
Teng-Leong Chew
Published In
Sci Rep
Nucleic Acids Res
Nat Commun
Clin Cancer Res
Brief Funct Genomics
Affiliations
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Recent Articles
1.
A systematic analyses of different bioinformatics pipelines for genomic data and its impact on deep learning models for chromatin loop prediction
Halder A, Agarwal A, Jodkowska K, Plewczynski D
Brief Funct Genomics . 2024 Mar; 23(5):538-548. PMID: 38555493
Genomic data analysis has witnessed a surge in complexity and volume, primarily driven by the advent of high-throughput technologies. In particular, studying chromatin loops and structures has become pivotal in...
2.
Publisher Correction: Super‑resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy
Parteka-Tojek Z, Zhu J, Lee B, Jodkowska K, Wang P, Aaron J, et al.
Sci Rep . 2022 Dec; 12(1):22014. PMID: 36539456
No abstract available.
3.
3D chromatin connectivity underlies replication origin efficiency in mouse embryonic stem cells
Jodkowska K, Pancaldi V, Rigau M, Almeida R, Fernandez-Justel J, Grana-Castro O, et al.
Nucleic Acids Res . 2022 Dec; 50(21):12149-12165. PMID: 36453993
In mammalian cells, chromosomal replication starts at thousands of origins at which replisomes are assembled. Replicative stress triggers additional initiation events from 'dormant' origins whose genomic distribution and regulation are...
4.
Super-resolution visualization of chromatin loop folding in human lymphoblastoid cells using interferometric photoactivated localization microscopy
Parteka-Tojek Z, Zhu J, Lee B, Jodkowska K, Wang P, Aaron J, et al.
Sci Rep . 2022 May; 12(1):8582. PMID: 35595799
The three-dimensional (3D) genome structure plays a fundamental role in gene regulation and cellular functions. Recent studies in 3D genomics inferred the very basic functional chromatin folding structures known as...
5.
3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome
Wlasnowolski M, Sadowski M, Czarnota T, Jodkowska K, Szalaj P, Tang Z, et al.
Nucleic Acids Res . 2020 May; 48(W1):W170-W176. PMID: 32442297
Structural variants (SVs) that alter DNA sequence emerge as a driving force involved in the reorganisation of DNA spatial folding, thus affecting gene transcription. In this work, we describe an...
6.
Multilayer OMIC Data in Medullary Thyroid Carcinoma Identifies the STAT3 Pathway as a Potential Therapeutic Target in Tumors
Mancikova V, Montero-Conde C, Perales-Paton J, Fernandez A, Santacana M, Jodkowska K, et al.
Clin Cancer Res . 2016 Sep; 23(5):1334-1345. PMID: 27620278
Medullary thyroid carcinoma (MTC) is a rare disease with few genetic drivers, and the etiology specific to each known susceptibility mutation remains unknown. Exploiting multilayer genomic data, we focused our...
7.
A short G1 phase imposes constitutive replication stress and fork remodelling in mouse embryonic stem cells
Ahuja A, Jodkowska K, Teloni F, Bizard A, Zellweger R, Herrador R, et al.
Nat Commun . 2016 Feb; 7:10660. PMID: 26876348
Embryonic stem cells (ESCs) represent a transient biological state, where pluripotency is coupled with fast proliferation. ESCs display a constitutively active DNA damage response (DDR), but its molecular determinants have...