Jonathan Karr
Overview
Explore the profile of Jonathan Karr including associated specialties, affiliations and a list of published articles.
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8
Citations
78
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0
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Recent Articles
1.
Smith L, Malik-Sheriff R, Nguyen T, Hermjakob H, Karr J, Shaikh B, et al.
bioRxiv
. 2025 Feb;
PMID: 39896466
The BioModels Repository contains over 1000 manually curated mechanistic models drawn from published literature, most of which are encoded in the Systems Biology Markup Language (SBML). This community-based standard formally...
2.
Smith L, Bergmann F, Garny A, Helikar T, Karr J, Nickerson D, et al.
J Integr Bioinform
. 2024 Apr;
21(1).
PMID: 38613325
Modern biological research is increasingly informed by computational simulation experiments, which necessitate the development of methods for annotating, archiving, sharing, and reproducing the conducted experiments. These simulations increasingly require extensive...
3.
Karr J, Malik-Sheriff R, Osborne J, Gonzalez-Parra G, Forgoston E, Bowness R, et al.
Front Syst Biol
. 2023 Mar;
2.
PMID: 36909847
During the COVID-19 pandemic, mathematical modeling of disease transmission has become a cornerstone of key state decisions. To advance the state-of-the-art host viral modeling to handle future pandemics, many scientists...
4.
Smith L, Bergmann F, Garny A, Helikar T, Karr J, Nickerson D, et al.
J Integr Bioinform
. 2022 Mar;
18(3):20210021.
PMID: 35330701
Computational simulation experiments increasingly inform modern biological research, and bring with them the need to provide ways to annotate, archive, share and reproduce the experiments performed. These simulations increasingly require...
5.
Maritan M, Autin L, Karr J, Covert M, Olson A, Goodsell D
J Mol Biol
. 2021 Nov;
434(2):167351.
PMID: 34774566
Building structural models of entire cells has been a long-standing cross-discipline challenge for the research community, as it requires an unprecedented level of integration between multiple sources of biological data...
6.
Marucci L, Barberis M, Karr J, Ray O, Race P, de Souza Andrade M, et al.
Front Bioeng Biotechnol
. 2020 Aug;
8:942.
PMID: 32850764
Computer-aided design (CAD) for synthetic biology promises to accelerate the rational and robust engineering of biological systems. It requires both detailed and quantitative mathematical and experimental models of the processes...
7.
Coyte R, McKinley K, Jiang S, Karr J, Dwyer G, Keyworth A, et al.
Sci Total Environ
. 2020 Feb;
711:135135.
PMID: 32000345
Hexavalent chromium (Cr(VI)) is a groundwater contaminant that is potentially harmful to human health. Understanding the occurrence of Cr(VI) in groundwater resources is critical for evaluating its risks to human...
8.
Tomlinson M, Bommarito P, George A, Yelton S, Cable P, Coyte R, et al.
Environ Res
. 2019 Aug;
177:108618.
PMID: 31419714
Well water is the primary drinking source for nearly a quarter of North Carolina residents. Many communities across the state have been concerned about their well water quality and inorganic...
9.
Cassar N, Bellenger J, Jackson R, Karr J, Barnett B
Oecologia
. 2011 Sep;
168(2):335-42.
PMID: 21879367
The most common currency for estimating N(2) fixation is acetylene reduction to ethylene. Real-time estimates of nitrogen fixation are needed to close the global nitrogen budget and these remain a...